RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 RNF165Q6ZSG1 346 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 ATP5L2Q7Z4Y8 100 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR10G9Q8NGN4 311 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR1J4Q8NGS1 313 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR52B2Q96RD2 323 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 EBPLQ9BY08 206 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 ZSCAN16Q9H4T2 348 aaPredicted RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 ZDHHC11Q9H8X9 412 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 RWDD2AQ9UIY3 292 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR51B4Q9Y5P0 310 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 ASXL1Q8IXJ9 1541 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 COL11A2P13942 1736 aaPredicted RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 HECW1Q76N89 1606 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 A0A087WUJ7 227 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 A0A0J9YXV3 536 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 PGPA6NDG6 321 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM183AA6NL82 134 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR11H12B2RN74 326 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 EEF1E1-BLOC1S5C9J1V9 151 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 EEF1E1O43324 174 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 SPAG7O75391 227 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 HAND1O96004 215 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 HLA-DPB1P04440 258 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR10J4P0C629 311 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 CXCL2P19875 107 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OMGP23515 440 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 CXCR1P25024 350 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 S100A2P29034 98 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC6A1P30531 599 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR1E2P47887 323 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 IFITM2Q01629 132 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF763Q0D2J5 394 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 PAFAH1B3Q15102 231 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM78BQ5VT40 261 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 TMEM236Q5W0B7 351 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 DNAJC24Q6P3W2 148 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC25A42Q86VD7 318 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR11H1Q8NG94 326 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR4M1Q8NGD0 313 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR51A2Q8NGJ7 313 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR2K2Q8NGT1 345 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR13D1Q8NGV5 346 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR11H2Q8NH07 326 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR10A6Q8NH74 314 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR10G6Q8NH81 332 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 PIFOQ8TCI5 191 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 TAMM41Q96BW9 452 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 ANKRD36BP1Q96IX9 119 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC35G5Q96KT7 338 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 PLEKHF1Q96S99 279 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 TIMM17AQ99595 171 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 KRTAP3-1Q9BYR8 98 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 SPANXA1Q9NS26 97 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 TMEM216Q9P0N5 145 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR12D3Q9UGF7 316 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 CASZ1Q86V15 1759 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 SAMD9LQ8IVG5 1584 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 TMEM131LA2VDJ0 1609 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 SETD2Q9BYW2 2564 aaPredicted RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 ZC3H13Q5T200 1668 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 A0A0X1KG70 313 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR4C46A6NHA9 309 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 COX7A2P2O60397 106 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 SYNJ2BPP57105 145 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 HERVK_113P61574 105 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 DAD1P61803 113 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 GUCA2BQ16661 112 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF718Q3SXZ3 478 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 PYCR3Q53H96 274 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 DCUN1D2Q6PH85 259 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 C17orf82Q86X59 251 aaPredicted RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 ZBTB8OSQ8IWT0 167 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR10J5Q8NHC4 309 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 LMO3Q8TAP4 145 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 GHSRQ92847 366 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 TM4SF18Q96CE8 201 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 MRPL48Q96GC5 212 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR52E6Q96RD3 313 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 PARP12Q9H0J9 701 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 KLK13Q9UKR3 277 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 POMPQ9Y244 141 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 NOTCH1P46531 2555 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 LRRK1Q38SD2 2015 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 NUP153P49790 1475 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 CICQ96RK0 1608 aaPredicted RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 PTPN23Q9H3S7 1636 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 ACACBO00763 2458 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 MAP1BP46821 2468 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 EPG5Q9HCE0 2579 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 IGLV8-61A0A075B6I0 122 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 A0A0J9YXY3 114 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 CCDC144AA2RUR9 1427 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 EFCAB10A6NFE3 127 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 ANGPTL7O43827 346 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 CRYBA1P05813 215 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 CDK2P24941 298 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 CD70P32970 193 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 MAP2K4P45985 399 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 GABARAPL2P60520 117 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 RPL23P62829 140 aaKnown RBP1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 128.3 ms