RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 IFNA4P05014 189 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 FAM87AP0C7U9 286 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 COX5BP10606 129 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 IDH3GP51553 393 aaPredicted RBP8.08□□□□□ -1.12
CUX1-206ENST00000437600 TMEM187Q14656 261 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 CLINT1Q14677 625 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 HERPUD1Q15011 391 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 MST1LQ2TV78 715 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 AVPI1Q5T686 147 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 ZNF818PQ6ZRF7 136 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 RNF141Q8WVD5 230 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 GTF3AQ92664 365 aaKnown RBP8.08□□□□□ -1.12
CUX1-206ENST00000437600 C10orf35Q96D05 121 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 FAM122AQ96E09 287 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 ZNF286AQ9HBT8 521 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 WFDC1Q9HC57 220 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 CCL28Q9NRJ3 127 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 PLCE1Q9P212 2302 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 PKDREJQ9NTG1 2253 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 TMEM218A2RU14 115 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 NKX2-6A6NCS4 301 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 G0S2P27469 103 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 CEBPDP49716 269 aaPredicted RBP8.08□□□□□ -1.12
CUX1-206ENST00000437600 FAM76BQ5HYJ3 339 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 CXorf66Q5JRM2 361 aaPredicted RBP8.08□□□□□ -1.12
CUX1-206ENST00000437600 Q6ZSR3 168 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 MDP1Q86V88 176 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 GAPTQ8N292 157 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 TMEM217Q8N7C4 229 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 SLC30A7Q8NEW0 376 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 RXFP4Q8TDU9 374 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 TMEM45BQ96B21 275 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 RBMXL1Q96E39 390 aaKnown RBP8.08□□□□□ -1.12
CUX1-206ENST00000437600 POM121L2Q96KW2 1035 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 NAA60Q9H7X0 242 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 CSMD1Q96PZ7 3565 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 IGKV1-6A0A0C4DH72 117 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 FAM24AA6NFZ4 105 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 ZNF44P15621 663 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 CD80P33681 288 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 HERV-K104P61576 105 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 KRTAP27-1Q3LI81 207 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 FBXW12Q6X9E4 464 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 COLCA1Q6ZS62 124 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 OR51H1Q8NH63 302 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 ASB13Q8WXK3 278 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 ABHD17AQ96GS6 310 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 HIST1H2AAQ96QV6 131 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 ZNF251Q9BRH9 671 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 ZDHHC8Q9ULC8 765 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 HSF4Q9ULV5 492 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 AMDHD2Q9Y303 409 aa8.08□□□□□ -1.12
CUX1-206ENST00000437600 TRAPPC2LH3BP13 241 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 H3BP45 60 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 GRPP07492 148 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 OR8U9P0C7N5 309 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 PTAFRP25105 342 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 CAV2P51636 162 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 PLP2Q04941 152 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 FOXF2Q12947 444 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 TMEM95Q3KNT9 176 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 VWA1Q6PCB0 445 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 ASCL4Q6XD76 172 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 ZDHHC23Q8IYP9 409 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 OR8U1Q8NH10 309 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 MSI2Q96DH6 328 aaKnown RBP8.07□□□□□ -1.12
CUX1-206ENST00000437600 AQP10Q96PS8 301 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 OR2J1Q9GZK6 312 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 PIGMQ9H3S5 423 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 UBE2J1Q9Y385 318 aaPredicted RBP8.07□□□□□ -1.12
CUX1-206ENST00000437600 FLNCQ14315 2725 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 UTP20O75691 2785 aaKnown RBP8.07□□□□□ -1.12
CUX1-206ENST00000437600 H0YL77 283 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 CDIPTO14735 213 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 DEDDO75618 318 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 CST7O76096 145 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 MUC1P15941 1255 aaPredicted RBP8.07□□□□□ -1.12
CUX1-206ENST00000437600 EPHA1P21709 976 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 NPBWR1P48145 328 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 ZNF616Q08AN1 781 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 RNPS1Q15287 305 aaKnown RBP8.07□□□□□ -1.12
CUX1-206ENST00000437600 CEACAM21Q3KPI0 293 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 TBC1D26Q86UD7 250 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 ABHD14AQ9BUJ0 271 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 PRDM14Q9GZV8 571 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 RHOFQ9HBH0 211 aa8.07□□□□□ -1.12
CUX1-206ENST00000437600 SPTBN1Q01082 2364 aaKnown RBP8.06□□□□□ -1.12
CUX1-206ENST00000437600 TRAV17A0A0B4J275 112 aa8.06□□□□□ -1.12
CUX1-206ENST00000437600 C3orf85A0A1B0GTC6 90 aa8.06□□□□□ -1.12
CUX1-206ENST00000437600 SIRPB1O00241 398 aa8.06□□□□□ -1.12
CUX1-206ENST00000437600 MPPED1O15442 326 aa8.06□□□□□ -1.12
CUX1-206ENST00000437600 SMIM6P0DI80 62 aa8.06□□□□□ -1.12
CUX1-206ENST00000437600 RD3LP0DJH9 198 aa8.06□□□□□ -1.12
CUX1-206ENST00000437600 ZNF16P17020 682 aaPredicted RBP8.06□□□□□ -1.12
CUX1-206ENST00000437600 GLP1RP43220 463 aa8.06□□□□□ -1.12
CUX1-206ENST00000437600 SMCO1Q147U7 214 aa8.06□□□□□ -1.12
CUX1-206ENST00000437600 ZNF826PQ6ZT77 177 aa8.06□□□□□ -1.12
CUX1-206ENST00000437600 MKXQ8IYA7 352 aa8.06□□□□□ -1.12
CUX1-206ENST00000437600 RPRMLQ8N4K4 120 aa8.06□□□□□ -1.12
CUX1-206ENST00000437600 SUMF2Q8NBJ7 301 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms