RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 GATA3P23771 443 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 DVL1P1P54792 670 aaPredicted RBP10.14□□□□□ -0.79
LINC00339-204ENST00000434233 DLX6P56179 175 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 SSBP1Q04837 148 aaKnown RBP10.14□□□□□ -0.79
LINC00339-204ENST00000434233 PAX8Q06710 450 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 ZNF273Q14593 569 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 C17orf58Q2M2W7 97 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 TUSC1Q2TAM9 212 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 BTNL3Q6UXE8 466 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 TCF23Q7RTU1 214 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 TRAPPC6BQ86SZ2 158 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 HOGA1Q86XE5 327 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 C11orf42Q8N5U0 333 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 OR10A7Q8NGE5 316 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 SETD6Q8TBK2 473 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 MRGPRDQ8TDS7 321 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 TMEM186Q96B77 213 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 COX4I2Q96KJ9 171 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 ZNF714Q96N38 554 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 ST6GALNAC5Q9BVH7 336 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 GAL3ST2Q9H3Q3 398 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 LINC00574Q9H8X3 128 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 LPAR2Q9HBW0 351 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 AKIP1Q9NQ31 210 aa10.14□□□□□ -0.79
LINC00339-204ENST00000434233 TRAV39A0A0B4J263 110 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 KBTBD11-OT1A0A1B0GTJ5 212 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 hCG_1809904A0A1W2PP81 198 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 A0A1W2PPE2 198 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 A0A1W2PR64 198 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 A0A1W2PRV1 198 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 TRDCB7Z8K6 153 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 NPIPB11E5RHQ5 1161 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 C15orf65H3BRN8 121 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 RBP4P02753 201 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 GLP1RP43220 463 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 KIR2DS4P43632 304 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 ARF6P62330 175 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 GUCA2AQ02747 115 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 LSAMPQ13449 338 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 KIR2DS1Q14954 304 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 HMGN3Q15651 99 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 ZNF79Q15937 498 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 PYDC2Q56P42 97 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 Q6ZPA2 131 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 GLCCI1Q86VQ1 547 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 KIR3DL3Q8N743 410 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 GDPD1Q8N9F7 314 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 OR52I2Q8NH67 350 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 ARL11Q969Q4 196 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 C18orf12Q96KH6 178 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 SRRQ9GZT4 340 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 TAF9BQ9HBM6 251 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 ZNF286AQ9HBT8 521 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 HIF1ANQ9NWT6 349 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 MTFP1Q9UDX5 166 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 ZNF230Q9UIE0 474 aaPredicted RBP10.13□□□□□ -0.79
LINC00339-204ENST00000434233 ANAPC10Q9UM13 185 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 KPTNQ9Y664 436 aa10.13□□□□□ -0.79
LINC00339-204ENST00000434233 FLNBO75369 2602 aaKnown RBP10.12□□□□□ -0.79
LINC00339-204ENST00000434233 C12orf77C9JDV5 145 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 SPINT2O43291 252 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 INHBBP09529 407 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 FOSL1P15407 271 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 CCL3L1P16619 93 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 HLA-DRB3P79483 266 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 DCAF12L2Q5VW00 463 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 HEPN1Q6WQI6 88 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 MFSD4AQ8N468 514 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 GVQW1Q8N7I0 195 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 BEST4Q8NFU0 473 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 OR52M1Q8NGK5 317 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 SMIM4Q8WVI0 70 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 GCDHQ92947 438 aaPredicted RBP10.12□□□□□ -0.79
LINC00339-204ENST00000434233 THAP7Q9BT49 309 aaPredicted RBP10.12□□□□□ -0.79
LINC00339-204ENST00000434233 IFT46Q9NQC8 304 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 CALYQ9NYX4 217 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 IDI2-AS1Q9NZ38 188 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 KLK11Q9UBX7 282 aa10.12□□□□□ -0.79
LINC00339-204ENST00000434233 MEX3AA1L020 520 aaKnown RBP10.11□□□□□ -0.79
LINC00339-204ENST00000434233 MEIS3P1A6NDR6 274 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 J3QLI3 93 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 F2RL2O00254 374 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 CD5LO43866 347 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 DIRAS3O95661 229 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 HBZP02008 142 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 SCTP09683 121 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 CTXN2P0C2S0 81 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 GSTT2P0CG29 244 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 GSTT2BP0CG30 244 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 CD99P14209 185 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 PRTN3P24158 256 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 CD40LGP29965 261 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 RCVRNP35243 200 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 PPP5CP53041 499 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 ACTBP60709 375 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 ACTG1P63261 375 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 HTD2P86397 168 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 DGCR2P98153 550 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 ZNF846Q147U1 533 aa10.11□□□□□ -0.79
LINC00339-204ENST00000434233 TMEM30BQ3MIR4 351 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms