RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 H1FXQ92522 213 aaKnown RBP14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 OR8B2Q96RD0 313 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 SLC6A7Q99884 636 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 GINS4Q9BRT9 223 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 MMP28Q9H239 520 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 MIOXQ9UGB7 285 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 LRBAP50851 2863 aa14.26□□□□□ -0.13
CCDC28B-202ENST00000421922 TRGV10A0A0A0MS01 117 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 TRAV39A0A0B4J263 110 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 A0A1B0GW55 424 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 BET1O15155 118 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 HSPA12AO43301 675 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 TCRBP04435 133 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 DUX4L2P0CJ85 424 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 DUX4L3P0CJ86 424 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 DUX4L4P0CJ87 422 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 DUX4L5P0CJ88 424 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 DUX4L6P0CJ89 424 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 DUX4L7P0CJ90 424 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 ERP29P30040 261 aaKnown RBP14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 TMEM155Q4W5P6 130 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 PLA1AQ53H76 456 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 DUX4L9Q6RFH8 374 aaPredicted RBP14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 ZNF565Q8N9K5 539 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 OR6F1Q8NGZ6 308 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 MRGPRDQ8TDS7 321 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 IL1F10Q8WWZ1 152 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 CREB3L1Q96BA8 519 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 MBNL3Q9NUK0 354 aaKnown RBP14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 KAAG1Q9UBP8 84 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 DUX4Q9UBX2 424 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 LPAR3Q9UBY5 353 aa14.25□□□□□ -0.13
CCDC28B-202ENST00000421922 TRAV6A0A075B6T7 132 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 CEACAM18A8MTB9 384 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 SPINT2O43291 252 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 NDUFB6O95139 128 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 DIRAS3O95661 229 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 IGHV4-39P01824 125 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 SCTP09683 121 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 IL2RGP31785 369 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 HERV-K104P61576 105 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 LYPD2Q6UXB3 125 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 BTN2A1Q7KYR7 527 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 OVCH2Q7RTZ1 564 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 ZNF554Q86TJ5 538 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 GLCCI1Q86VQ1 547 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 SLC25A21Q9BQT8 299 aaPredicted RBP14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 C20orf85Q9H1P6 137 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 TAF9BQ9HBM6 251 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 NUDT15Q9NV35 164 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 SLC2A8Q9NY64 477 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 KIAA2026Q5HYC2 2103 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 hADV38S2A0JD32 116 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 DVL1O14640 695 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 H2AFB2P0C5Z0 115 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 ZNF735P0CB33 412 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 ECI1P42126 302 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 HMGN3Q15651 99 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 CLEC2AQ6UVW9 174 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 Q6ZPA2 131 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 ZNF525Q8N782 197 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 OR10J5Q8NHC4 309 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 IGFBPL1Q8WX77 278 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 NINJ1Q92982 152 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 DACT3Q96B18 629 aaPredicted RBP14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 NEIL1Q96FI4 390 aaPredicted RBP14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 KIRREL1Q96J84 757 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 LURAP1Q96LR2 239 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 SCGB3A2Q96PL1 93 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 ZNF2Q9BSG1 426 aaPredicted RBP14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 NCOR1P1Q9H4R4 102 aa14.24□□□□□ -0.13
CCDC28B-202ENST00000421922 hCG_2014768A0A024R1R8 64 aa14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 FAM172BPA6NC97 362 aa14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 INMT-MINDY4F8WBC2 141 aa14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 ARPC1BO15143 372 aaKnown RBP14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 DHFRP00374 187 aa14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 RLN1P04808 185 aa14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 PGAM2P15259 253 aa14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 GZMHP20718 246 aa14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 IGSF11Q5DX21 431 aa14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 Q6ZNX1 250 aa14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 OR13A1Q8NGR1 328 aa14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 ARL11Q969Q4 196 aa14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 GALMQ96C23 342 aa14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 PERPQ96FX8 193 aa14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 PIMREGQ9BSJ6 248 aa14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 NARFLQ9H6Q4 476 aa14.23□□□□□ -0.13
CCDC28B-202ENST00000421922 C12orf77C9JDV5 145 aa14.22□□□□□ -0.13
CCDC28B-202ENST00000421922 FCGR2CP31995 323 aa14.22□□□□□ -0.13
CCDC28B-202ENST00000421922 RPL31P62899 125 aaKnown RBP14.22□□□□□ -0.13
CCDC28B-202ENST00000421922 MEF2CQ06413 473 aaPredicted RBP14.22□□□□□ -0.13
CCDC28B-202ENST00000421922 FAM185AQ8N0U4 392 aa14.22□□□□□ -0.13
CCDC28B-202ENST00000421922 TERB2Q8NHR7 220 aa14.22□□□□□ -0.13
CCDC28B-202ENST00000421922 UPRTQ96BW1 309 aa14.22□□□□□ -0.13
CCDC28B-202ENST00000421922 CABLES2Q9BTV7 478 aa14.22□□□□□ -0.13
CCDC28B-202ENST00000421922 LIME1Q9H400 295 aa14.22□□□□□ -0.13
CCDC28B-202ENST00000421922 CTSZQ9UBR2 303 aa14.22□□□□□ -0.13
CCDC28B-202ENST00000421922 CLN8Q9UBY8 286 aa14.22□□□□□ -0.13
CCDC28B-202ENST00000421922 ZNF69Q9UC07 566 aa14.22□□□□□ -0.13
CCDC28B-202ENST00000421922 SLC23A1Q9UHI7 598 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 893.3 ms