RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 DNAH9Q9NYC9 4486 aa9.11□□□□□ -0.95
USP4-204ENST00000416417 SDCBPO00560 298 aaPredicted RBP9.11□□□□□ -0.95
USP4-204ENST00000416417 WBP4O75554 376 aaKnown RBP9.11□□□□□ -0.95
USP4-204ENST00000416417 LALBAP00709 142 aa9.11□□□□□ -0.95
USP4-204ENST00000416417 RAB7AP51149 207 aa9.11□□□□□ -0.95
USP4-204ENST00000416417 OR8H3Q8N146 312 aa9.11□□□□□ -0.95
USP4-204ENST00000416417 STPG2Q8N412 459 aa9.11□□□□□ -0.95
USP4-204ENST00000416417 Q8NFD4 153 aa9.11□□□□□ -0.95
USP4-204ENST00000416417 NEK7Q8TDX7 302 aa9.11□□□□□ -0.95
USP4-204ENST00000416417 CHPT1Q8WUD6 406 aa9.11□□□□□ -0.95
USP4-204ENST00000416417 EAF1Q96JC9 268 aaPredicted RBP9.11□□□□□ -0.95
USP4-204ENST00000416417 C9orf16Q9BUW7 83 aa9.11□□□□□ -0.95
USP4-204ENST00000416417 RPL36Q9Y3U8 105 aaKnown RBP9.11□□□□□ -0.95
USP4-204ENST00000416417 KMT2CQ8NEZ4 4911 aaKnown RBP9.11□□□□□ -0.95
USP4-204ENST00000416417 A0A1W2PPK0 400 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 TMEM30CPA0ZSE6 113 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 C15orf65H3BRN8 121 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 DUS4LO95620 317 aaKnown RBP9.1□□□□□ -0.95
USP4-204ENST00000416417 IGHG2P01859 326 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 CSTBP04080 98 aaKnown RBP9.1□□□□□ -0.95
USP4-204ENST00000416417 GAPDHP04406 335 aaKnown RBP9.1□□□□□ -0.95
USP4-204ENST00000416417 RPLP1P05386 114 aaKnown RBP9.1□□□□□ -0.95
USP4-204ENST00000416417 ZNF93P35789 620 aaPredicted RBP9.1□□□□□ -0.95
USP4-204ENST00000416417 CD69Q07108 199 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 SLC22A6Q4U2R8 563 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 KLHL22Q53GT1 634 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 ZFP1Q6P2D0 407 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 PRR18Q8N4B5 295 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 OR51D1Q8NGF3 324 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 OR10V1Q8NGI7 309 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 TFAP2CQ92754 450 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 RAX2Q96IS3 184 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 NCOR1P1Q9H4R4 102 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 FGF20Q9NP95 211 aaPredicted RBP9.1□□□□□ -0.95
USP4-204ENST00000416417 MRPS18AQ9NVS2 196 aaKnown RBP9.1□□□□□ -0.95
USP4-204ENST00000416417 CLEC2DQ9UHP7 191 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 TRAV8-7A0A075B6U6 113 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 PNMA8CA0A1B0GUJ8 204 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 FGF16O43320 207 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 MPZL2O60487 215 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 CD2P06729 351 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 BDKRB2P30411 391 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 VHLP40337 213 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 GPR12P47775 334 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 LUMP51884 338 aaPredicted RBP9.1□□□□□ -0.95
USP4-204ENST00000416417 PPP3R1P63098 170 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 ZNF816Q0VGE8 651 aaPredicted RBP9.1□□□□□ -0.95
USP4-204ENST00000416417 MRPL28Q13084 256 aaKnown RBP9.1□□□□□ -0.95
USP4-204ENST00000416417 RPL22L1Q6P5R6 122 aaKnown RBP9.1□□□□□ -0.95
USP4-204ENST00000416417 ZNF695Q8IW36 515 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 Q8N6K4 173 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 Q8N9W7 124 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 OR4K15Q8NH41 348 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 DPF1Q92782 380 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 CPNE2Q96FN4 548 aaPredicted RBP9.1□□□□□ -0.95
USP4-204ENST00000416417 MYCBPQ99417 103 aaPredicted RBP9.1□□□□□ -0.95
USP4-204ENST00000416417 P2RX4Q99571 388 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 ZNF184Q99676 751 aaPredicted RBP9.1□□□□□ -0.95
USP4-204ENST00000416417 HSPB9Q9BQS6 159 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 S100A14Q9HCY8 104 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 TMEM138Q9NPI0 162 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 GFOD1Q9NXC2 390 aa9.1□□□□□ -0.95
USP4-204ENST00000416417 AIPO00170 330 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 BAG2O95816 211 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 MT-ND4P03905 459 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 GZMHP20718 246 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 MYCNOSP40205 109 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 KCNJ3P48549 501 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 F2RL1P55085 397 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 SLC35B1P78383 322 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 PAX5Q02548 391 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 EBI3Q14213 229 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 FOXRED2Q8IWF2 684 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 PQLC1Q8N2U9 271 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 OR10A7Q8NGE5 316 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 OR1L1Q8NH94 360 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 RTN4IP1Q8WWV3 396 aaPredicted RBP9.09□□□□□ -0.95
USP4-204ENST00000416417 GHSRQ92847 366 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 MUL1Q969V5 352 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 S100A13Q99584 98 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 BANF2Q9H503 90 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 IFT22Q9H7X7 185 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 PLSCR3Q9NRY6 295 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 IL36GQ9NZH8 169 aa9.09□□□□□ -0.95
USP4-204ENST00000416417 C12orf77C9JDV5 145 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 CCL24O00175 119 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 OGG1O15527 345 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 IGFBP3P17936 291 aaPredicted RBP9.08□□□□□ -0.96
USP4-204ENST00000416417 ZNF134P52741 427 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 RIPK1Q13546 671 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 NHLRC3Q5JS37 347 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 SYT6Q5T7P8 510 aaPredicted RBP9.08□□□□□ -0.96
USP4-204ENST00000416417 TMPRSS11AQ6ZMR5 421 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 ZNF497Q6ZNH5 498 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 SLC16A12Q6ZSM3 486 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 TGIF2LXQ8IUE1 241 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 TMEM104Q8NE00 496 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 OR2T10Q8NGZ9 312 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 ST6GALNAC6Q969X2 333 aa9.08□□□□□ -0.96
USP4-204ENST00000416417 PRR25Q96S07 402 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms