RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 GHRLQ9UBU3 117 aa22.9■■□□□ 1.26
HMGB1-205ENST00000399494 PITPNC1Q9UKF7 332 aa22.9■■□□□ 1.26
HMGB1-205ENST00000399494 ODAMA1E959 279 aa22.89■■□□□ 1.25
HMGB1-205ENST00000399494 SUMF2Q8NBJ7 301 aa22.89■■□□□ 1.25
HMGB1-205ENST00000399494 COQ2Q96H96 371 aa22.89■■□□□ 1.25
HMGB1-205ENST00000399494 DPCDQ9BVM2 203 aaPredicted RBP22.89■■□□□ 1.25
HMGB1-205ENST00000399494 BARHL1Q9BZE3 327 aa22.89■■□□□ 1.25
HMGB1-205ENST00000399494 SELENOIQ9C0D9 397 aa22.89■■□□□ 1.25
HMGB1-205ENST00000399494 CST11Q9H112 138 aa22.89■■□□□ 1.25
HMGB1-205ENST00000399494 GAL3ST2Q9H3Q3 398 aa22.89■■□□□ 1.25
HMGB1-205ENST00000399494 BANF2Q9H503 90 aa22.89■■□□□ 1.25
HMGB1-205ENST00000399494 IFT22Q9H7X7 185 aa22.89■■□□□ 1.25
HMGB1-205ENST00000399494 UBBP0CG47 229 aa22.88■■□□□ 1.25
HMGB1-205ENST00000399494 MGMTP16455 207 aa22.88■■□□□ 1.25
HMGB1-205ENST00000399494 KCNJ3P48549 501 aa22.88■■□□□ 1.25
HMGB1-205ENST00000399494 NEK7Q8TDX7 302 aa22.88■■□□□ 1.25
HMGB1-205ENST00000399494 PHF21AQ96BD5 680 aa22.88■■□□□ 1.25
HMGB1-205ENST00000399494 IGHV1-8P0DP01 117 aa22.87■■□□□ 1.25
HMGB1-205ENST00000399494 HTR2CP28335 458 aa22.87■■□□□ 1.25
HMGB1-205ENST00000399494 DYNLT3P51808 116 aa22.87■■□□□ 1.25
HMGB1-205ENST00000399494 BLCAPP62952 87 aa22.87■■□□□ 1.25
HMGB1-205ENST00000399494 C1orf100Q5SVJ3 147 aa22.87■■□□□ 1.25
HMGB1-205ENST00000399494 FAM46BQ96A09 425 aa22.87■■□□□ 1.25
HMGB1-205ENST00000399494 PLGRKTQ9HBL7 147 aa22.87■■□□□ 1.25
HMGB1-205ENST00000399494 OR6C3Q9NZP0 311 aa22.87■■□□□ 1.25
HMGB1-205ENST00000399494 ZNF581Q9P0T4 197 aa22.87■■□□□ 1.25
HMGB1-205ENST00000399494 AK6Q9Y3D8 172 aaKnown RBP22.87■■□□□ 1.25
HMGB1-205ENST00000399494 MEIKINA0A087WXM9 373 aa22.86■■□□□ 1.25
HMGB1-205ENST00000399494 TMEM104Q8NE00 496 aa22.86■■□□□ 1.25
HMGB1-205ENST00000399494 WFDC9Q8NEX5 89 aa22.86■■□□□ 1.25
HMGB1-205ENST00000399494 OR6M1Q8NGM8 313 aa22.86■■□□□ 1.25
HMGB1-205ENST00000399494 SPACA1Q9HBV2 294 aa22.86■■□□□ 1.25
HMGB1-205ENST00000399494 TAS2R3Q9NYW6 316 aa22.86■■□□□ 1.25
HMGB1-205ENST00000399494 KIF25Q9UIL4 384 aa22.86■■□□□ 1.25
HMGB1-205ENST00000399494 JUNBP17275 347 aaPredicted RBP22.85■■□□□ 1.25
HMGB1-205ENST00000399494 GLP1RP43220 463 aa22.85■■□□□ 1.25
HMGB1-205ENST00000399494 CORO2AQ92828 525 aa22.85■■□□□ 1.25
HMGB1-205ENST00000399494 SESN1Q9Y6P5 492 aa22.85■■□□□ 1.25
HMGB1-205ENST00000399494 TRDV1A0A1B0GX56 115 aa22.84■■□□□ 1.25
HMGB1-205ENST00000399494 PEX14O75381 377 aa22.84■■□□□ 1.25
HMGB1-205ENST00000399494 MPIG6BO95866 241 aa22.84■■□□□ 1.25
HMGB1-205ENST00000399494 MYL9P24844 172 aa22.84■■□□□ 1.25
HMGB1-205ENST00000399494 NEDD8Q15843 81 aa22.84■■□□□ 1.25
HMGB1-205ENST00000399494 FOXB2Q5VYV0 432 aa22.84■■□□□ 1.25
HMGB1-205ENST00000399494 PLPPR1Q8TBJ4 325 aa22.84■■□□□ 1.25
HMGB1-205ENST00000399494 OCSTAMPQ9BR26 566 aa22.84■■□□□ 1.25
HMGB1-205ENST00000399494 SLC22A1O15245 554 aa22.83■■□□□ 1.25
HMGB1-205ENST00000399494 TNFAIP8O95379 198 aa22.83■■□□□ 1.25
HMGB1-205ENST00000399494 DYNC1I2Q13409 638 aaKnown RBP22.83■■□□□ 1.25
HMGB1-205ENST00000399494 RSBN1Q5VWQ0 802 aaPredicted RBP22.83■■□□□ 1.25
HMGB1-205ENST00000399494 CD200R1LQ6Q8B3 271 aa22.83■■□□□ 1.25
HMGB1-205ENST00000399494 ZNF565Q8N9K5 539 aa22.83■■□□□ 1.25
HMGB1-205ENST00000399494 Q96M66 194 aa22.83■■□□□ 1.25
HMGB1-205ENST00000399494 HILPDAQ9Y5L2 63 aa22.83■■□□□ 1.25
HMGB1-205ENST00000399494 FAM90A10PA6NDY2 464 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 FAM90A18PA6NE21 464 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 FAM90A16PA6NEW6 464 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 FAM90A20PA6NIJ5 464 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 FAM90A7PA6NKC0 464 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 ZNF729A6NN14 1252 aaPredicted RBP22.82■■□□□ 1.24
HMGB1-205ENST00000399494 FAM90A22PA8MWA6 464 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 FAM90A12PA8MX19 464 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 FAM90A5PA8MXJ8 464 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 FAM90A23PA8MXZ1 464 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 MCRIP1C9JLW8 97 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 PDCD5O14737 125 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 FAM90A15PP0C7V4 464 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 FAM90A13PP0C7W8 464 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 FAM90A14PP0C7W9 464 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 FAM90A24PP0C7X0 464 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 GALP22466 123 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 PSMD7P51665 324 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 CD83Q01151 205 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 RBM39Q14498 530 aaKnown RBP22.82■■□□□ 1.24
HMGB1-205ENST00000399494 PRAMEF5Q5TYX0 476 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 OR52W1Q6IF63 320 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 RAB12Q6IQ22 244 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 KCNG3Q8TAE7 436 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 GFI1Q99684 422 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 TMEM59Q9BXS4 323 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 NCOR1P1Q9H4R4 102 aa22.82■■□□□ 1.24
HMGB1-205ENST00000399494 SLC17A2O00624 439 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 BPNT1O95861 308 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 VSIG8P0DPA2 414 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 CDK2P24941 298 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 VDAC2P45880 294 aaPredicted RBP22.81■■□□□ 1.24
HMGB1-205ENST00000399494 PAX5Q02548 391 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 P2RY14Q15391 338 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 RAB11BQ15907 218 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 TMEM95Q3KNT9 176 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 ARSJQ5FYB0 599 aaPredicted RBP22.81■■□□□ 1.24
HMGB1-205ENST00000399494 MINOS1Q5TGZ0 78 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 C22orf42Q6IC83 251 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 OR10K2Q6IF99 312 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 HEPN1Q6WQI6 88 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 TMEM133Q9H2Q1 129 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 PEX16Q9Y5Y5 336 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 MINOS1-NBL1R4GNA1 71 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 V9GY05 133 aa22.81■■□□□ 1.24
HMGB1-205ENST00000399494 TMEM30CPA0ZSE6 113 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms