RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 IGKV1-13P0DP09 117 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 EPHA1P21709 976 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 CD200P41217 278 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 ERVFRD-1P60508 538 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 ZNF154Q13106 437 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 PDCD1Q15116 288 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 OR2B11Q5JQS5 317 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 YRDCQ86U90 279 aaKnown RBP8.55□□□□□ -1.04
COL17A1-203ENST00000393211 C1orf87Q8N0U7 546 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 CPEB3Q8NE35 698 aaKnown RBP8.55□□□□□ -1.04
COL17A1-203ENST00000393211 OR56B2PQ8NGI1 322 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 PINX1Q96BK5 328 aaKnown RBP8.55□□□□□ -1.04
COL17A1-203ENST00000393211 RCC1LQ96I51 464 aaKnown RBP8.55□□□□□ -1.04
COL17A1-203ENST00000393211 HIST1H2AAQ96QV6 131 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 NOSIPQ9Y314 301 aaKnown RBP8.55□□□□□ -1.04
COL17A1-203ENST00000393211 TNRC6AQ8NDV7 1962 aaKnown RBP8.55□□□□□ -1.04
COL17A1-203ENST00000393211 BRWD1Q9NSI6 2320 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 SHANK1Q9Y566 2161 aa8.55□□□□□ -1.04
COL17A1-203ENST00000393211 TRBV24-1A0A075B6N3 115 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 IGKV1-6A0A0C4DH72 117 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 IFITM10A6NMD0 228 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 NTN3O00634 580 aaPredicted RBP8.54□□□□□ -1.04
COL17A1-203ENST00000393211 PPP1R2P9O14990 202 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 DEGS1O15121 323 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 HIST1H2BKO60814 126 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 PTBP3O95758 552 aaKnown RBP8.54□□□□□ -1.04
COL17A1-203ENST00000393211 IFNA1P01562 189 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 OPN1MWP04001 364 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 HIST1H2BJP06899 126 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 SERPINE2P07093 398 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 OPN1MW2P0DN77 364 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 OPN1MW3P0DN78 364 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 BCL2P10415 239 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 HIST1H2BOP23527 126 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 HIST1H2BBP33778 126 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 APLNRP35414 380 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 HAAOP46952 286 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 DUSP3P51452 185 aaPredicted RBP8.54□□□□□ -1.04
COL17A1-203ENST00000393211 HIST1H2BDP58876 126 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 RPS18P62269 152 aaKnown RBP8.54□□□□□ -1.04
COL17A1-203ENST00000393211 HIST1H2BCP62807 126 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 NKX6-1P78426 367 aaPredicted RBP8.54□□□□□ -1.04
COL17A1-203ENST00000393211 HIST2H2BEQ16778 126 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 PYY3Q5JQD4 70 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.54□□□□□ -1.04
COL17A1-203ENST00000393211 FAM90A2PQ658T7 463 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 ZNF324BQ6AW86 544 aaPredicted RBP8.54□□□□□ -1.04
COL17A1-203ENST00000393211 SLC25A24Q6NUK1 477 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 PCSK4Q6UW60 755 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 MOB1BQ7L9L4 216 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 MRPL21Q7Z2W9 205 aaKnown RBP8.54□□□□□ -1.04
COL17A1-203ENST00000393211 THNSL2Q86YJ6 484 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 TMEM217Q8N7C4 229 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 NAXEQ8NCW5 288 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 IFI44Q8TCB0 444 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 MRPL30Q8TCC3 161 aaKnown RBP8.54□□□□□ -1.04
COL17A1-203ENST00000393211 HIST1H2BHQ93079 126 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 GPR146Q96CH1 333 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 HIST1H2BNQ99877 126 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 HIST1H2BMQ99879 126 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 STRADBQ9C0K7 418 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 CALHM2Q9HA72 323 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 RFNGQ9Y644 331 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 CDH23Q9H251 3354 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 CCDC163A0A0D9SF12 145 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 LRRC3CA6NJW4 275 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 OR5B21A6NL26 309 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 FAM90A26D6RGX4 464 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 CYB5BO43169 146 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 MRPL33O75394 65 aaKnown RBP8.54□□□□□ -1.04
COL17A1-203ENST00000393211 ARR3P36575 388 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 MDH2P40926 338 aaKnown RBP8.54□□□□□ -1.04
COL17A1-203ENST00000393211 GFRA1P56159 465 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 PRSS12P56730 875 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 HBG1P69891 147 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 HBG2P69892 147 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 RUNX1Q01196 453 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 ZFP36L1Q07352 338 aaKnown RBP8.54□□□□□ -1.04
COL17A1-203ENST00000393211 HLA-BQ31612 363 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 ZNF468Q5VIY5 522 aaPredicted RBP8.54□□□□□ -1.04
COL17A1-203ENST00000393211 TCEAL6Q6IPX3 200 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 MRGPRGQ86SM5 289 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 OR10J5Q8NHC4 309 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 NEK7Q8TDX7 302 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 FAM210BQ96KR6 192 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 PFDN5Q99471 154 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 AGMATQ9BSE5 352 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 IER2Q9BTL4 223 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 PKIBQ9C010 78 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 UBE2ZQ9H832 354 aaPredicted RBP8.54□□□□□ -1.04
COL17A1-203ENST00000393211 SDF2L1Q9HCN8 221 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 MTCH1Q9NZJ7 389 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 VAX2Q9UIW0 290 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 TIMM9Q9Y5J7 89 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 MPC1Q9Y5U8 109 aa8.54□□□□□ -1.04
COL17A1-203ENST00000393211 CEP290O15078 2479 aa8.53□□□□□ -1.04
COL17A1-203ENST00000393211 TGIF2-C20orf24A0A0A6YYL0 155 aa8.53□□□□□ -1.04
COL17A1-203ENST00000393211 SYNGR2O43760 224 aa8.53□□□□□ -1.04
COL17A1-203ENST00000393211 IFNA10P01566 189 aa8.53□□□□□ -1.04
COL17A1-203ENST00000393211 HIST1H1BP16401 226 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms