RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ASB5Q8WWX0 329 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 GMPPAQ96IJ6 420 aaPredicted RBP11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 PACRGQ96M98 296 aaPredicted RBP11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 CLN8Q9UBY8 286 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 CD99P14209 185 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 SLC35B1P78383 322 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 GABRA6Q16445 453 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 DHRS7CA6NNS2 312 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 ERVFRD-1P60508 538 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 LHX8Q68G74 356 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 AMER3Q8N944 861 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 OR10J6PQ8NGY7 276 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 TMEM140Q9NV12 185 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 NHSQ6T4R5 1651 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 CNTRLQ7Z7A1 2325 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 OGG1O15527 345 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 RGPD4Q7Z3J3 1758 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 J3QT63 122 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 ITGBL1O95965 494 aaPredicted RBP11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 CT62P0C5K7 136 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 DAOP14920 347 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 LOXL3P58215 753 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 ZIC1Q15915 447 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 P2RX4Q99571 388 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 A0A087X0M5 115 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 A0A1B0GX30 115 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 ZNF735P0CB33 412 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 TSPO2Q5TGU0 170 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 C17orf47Q8NEP4 570 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 COX14Q96I36 57 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 TP53RKQ96S44 253 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 MS4A7Q9GZW8 240 aaPredicted RBP11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 PCM1Q15154 2024 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 MEOX2P50222 304 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 MRPL54Q6P161 138 aaKnown RBP11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 GPR35Q9HC97 309 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 SELENOPP49908 381 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 FRRS1LQ9P0K9 344 aa11.23□□□□□ -0.61
CCDC88C-204ENST00000389857 C16orf97H3BN30 126 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 RPL36A-HNRNPH2H7BZ11 118 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 TAS2R60P59551 318 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 RPS4XP62701 263 aaKnown RBP11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 MESTQ5EB52 335 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 SEZ6L2Q6UXD5 910 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 TMEM92Q6UXU6 159 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 CDC42EP3Q9UKI2 254 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 IFITM10A6NMD0 228 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 SOCS1O15524 211 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 LRRC75BQ2VPJ9 315 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 C9orf172C9J069 976 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 NPIPB6E9PJ23 425 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 PITX3O75364 302 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 DMKNQ6E0U4 476 aaPredicted RBP11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 ATG4DQ86TL0 474 aaPredicted RBP11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 PAXXQ9BUH6 204 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 ZNF385DQ9H6B1 395 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 RALYQ9UKM9 306 aaKnown RBP11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 COX6CP09669 75 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 C16orf47Q6ZP98 133 aaPredicted RBP11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 STPG2Q8N412 459 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 MRGPRFQ96AM1 343 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 IGHV3OR15-7A0A075B7D8 119 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 LOC102724200A0A096LPH7 203 aaPredicted RBP11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 A0A1W2PS18 150 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 RAB29O14966 203 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 CTGFP29279 349 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 EWSR1Q01844 656 aaKnown RBP eCLIP11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 MOB4Q9Y3A3 225 aa11.22□□□□□ -0.61
CCDC88C-204ENST00000389857 SNURFLB1AK76 121 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 J3QR06 171 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 ADAP1O75689 374 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 MMDQ15546 238 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 THSD4Q6ZMP0 1018 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 WDFY1Q8IWB7 410 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 METTL26Q96S19 204 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 CCL28Q9NRJ3 127 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 FUT9Q9Y231 359 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 CTXND1A0A1B0GTU2 59 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 TMEM218A2RU14 115 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 PEX11BO96011 259 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 C3AR1Q16581 482 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 CALHM1Q8IU99 346 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 TINAGQ9UJW2 476 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 PAGE4O60829 102 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 CRHP06850 196 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 IER3P46695 156 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 TMEM50BP56557 158 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 TBX15Q96SF7 602 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 IL17BQ9UHF5 180 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 ZNF324O75467 553 aaPredicted RBP11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 CD81P60033 236 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 KIAA0040Q15053 153 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 ADAT3Q96EY9 351 aaPredicted RBP11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 SNX22Q96L94 193 aa11.21□□□□□ -0.61
CCDC88C-204ENST00000389857 LOC389332A0A1B0GUA5 103 aa11.21□□□□□ -0.62
CCDC88C-204ENST00000389857 WNT9BO14905 357 aa11.21□□□□□ -0.62
CCDC88C-204ENST00000389857 WNT5AP41221 380 aa11.21□□□□□ -0.62
CCDC88C-204ENST00000389857 RAB9AP51151 201 aa11.21□□□□□ -0.62
CCDC88C-204ENST00000389857 ABLIM2Q6H8Q1 611 aa11.21□□□□□ -0.62
CCDC88C-204ENST00000389857 LDLRAD3Q86YD5 345 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms