RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 NOL4LQ96MY1 436 aaPredicted RBP15.22■□□□□ 0.03
SQSTM1-202ENST00000389805 ALKBH3Q96Q83 286 aaPredicted RBP15.22■□□□□ 0.03
SQSTM1-202ENST00000389805 NECAP2Q9NVZ3 263 aa15.22■□□□□ 0.03
SQSTM1-202ENST00000389805 ZNHIT1O43257 154 aa15.22■□□□□ 0.03
SQSTM1-202ENST00000389805 CER1O95813 267 aa15.22■□□□□ 0.03
SQSTM1-202ENST00000389805 HLA-HP01893 362 aa15.22■□□□□ 0.03
SQSTM1-202ENST00000389805 NKX2-1P43699 371 aaPredicted RBP15.22■□□□□ 0.03
SQSTM1-202ENST00000389805 ZNF154Q13106 437 aa15.22■□□□□ 0.03
SQSTM1-202ENST00000389805 PPP1R32Q7Z5V6 425 aa15.22■□□□□ 0.03
SQSTM1-202ENST00000389805 BATF2Q8N1L9 274 aa15.22■□□□□ 0.03
SQSTM1-202ENST00000389805 OR4D5Q8NGN0 318 aa15.22■□□□□ 0.03
SQSTM1-202ENST00000389805 LRFN1Q9P244 771 aa15.22■□□□□ 0.03
SQSTM1-202ENST00000389805 XKRY2A2RUG3 117 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 DHRS3O75911 302 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 CYC1P08574 325 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 CTSSP25774 331 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 DUSP3P51452 185 aaPredicted RBP15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 B3GALT5-AS1P59052 145 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 RAB4BP61018 213 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 WIPI1Q5MNZ9 446 aaPredicted RBP15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 FAM90A2PQ658T7 463 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 LCN15Q6UWW0 184 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 C1orf210Q8IVY1 113 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 SNIP1Q8TAD8 396 aaKnown RBP15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 ZNF665Q9H7R5 613 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 C19orf67A6NJJ6 358 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 H3BP45 60 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 RRP8O43159 456 aaKnown RBP15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 CXCL13O43927 109 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 IGLV3-1P01715 115 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 VAMP2P63027 116 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 TRA2AQ13595 282 aaKnown RBP eCLIP15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 KIAA2026Q5HYC2 2103 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 ZNF774Q6NX45 483 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 OR1P1Q8NH06 330 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 HIST1H2AAQ96QV6 131 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 GPR173Q9NS66 373 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 DEPPQ9NTK1 212 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 ARHGAP21Q5T5U3 1957 aa15.21■□□□□ 0.03
SQSTM1-202ENST00000389805 DOCK10Q96BY6 2186 aa15.21■□□□□ 0.02
SQSTM1-202ENST00000389805 A0A1B0GU03 582 aa15.21■□□□□ 0.02
SQSTM1-202ENST00000389805 VAMP5O95183 116 aa15.21■□□□□ 0.02
SQSTM1-202ENST00000389805 B4GALT1P15291 398 aa15.21■□□□□ 0.02
SQSTM1-202ENST00000389805 ERVS71-1P61550 626 aa15.21■□□□□ 0.02
SQSTM1-202ENST00000389805 CLN3Q13286 438 aa15.21■□□□□ 0.02
SQSTM1-202ENST00000389805 TCFL5Q9UL49 500 aa15.21■□□□□ 0.02
SQSTM1-202ENST00000389805 CARD18P57730 90 aa15.2■□□□□ 0.02
SQSTM1-202ENST00000389805 DECR2Q9NUI1 292 aa15.2■□□□□ 0.02
SQSTM1-202ENST00000389805 PINLYPA6NC86 204 aa15.2■□□□□ 0.02
SQSTM1-202ENST00000389805 PITX3O75364 302 aa15.2■□□□□ 0.02
SQSTM1-202ENST00000389805 TMEM50AO95807 157 aa15.2■□□□□ 0.02
SQSTM1-202ENST00000389805 IGHV3-9P01782 118 aa15.2■□□□□ 0.02
SQSTM1-202ENST00000389805 P04436 131 aa15.2■□□□□ 0.02
SQSTM1-202ENST00000389805 SFTPCP11686 197 aa15.2■□□□□ 0.02
SQSTM1-202ENST00000389805 THNSL2Q86YJ6 484 aa15.2■□□□□ 0.02
SQSTM1-202ENST00000389805 OR10A7Q8NGE5 316 aa15.2■□□□□ 0.02
SQSTM1-202ENST00000389805 LAMP3Q9UQV4 416 aa15.2■□□□□ 0.02
SQSTM1-202ENST00000389805 CYB5R3P00387 301 aaPredicted RBP15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 MBP02144 154 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 PLA2G5P39877 138 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 CLDN15P56746 228 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 SLC25A24Q6NUK1 477 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 ZNF66Q6ZN08 573 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 TMEM37Q8WXS4 190 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 RCC1LQ96I51 464 aaKnown RBP15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 PLEKHF2Q9H8W4 249 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 V9GYS6 101 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 LOC102723971A0A1B0GUV8 181 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 OTX1P32242 354 aaPredicted RBP15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 CEACAM6P40199 344 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 TLE4Q04727 773 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 ARL6IP1Q15041 203 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 PRSS8Q16651 343 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 PEAR1Q5VY43 1037 aaPredicted RBP15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 GGNQ86UU5 652 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 FGFBP3Q8TAT2 258 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 ZNF845Q96IR2 970 aaPredicted RBP15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 TM2D1Q9BX74 207 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 IL17BQ9UHF5 180 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 FREM1Q5H8C1 2179 aa15.19■□□□□ 0.02
SQSTM1-202ENST00000389805 A0A0U1RQV5 110 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 A6NNC1 897 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 RAC3P60763 192 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 HIST1H3AP68431 136 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 PMS2P11Q13670 270 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 FOXL2NBQ6ZUU3 175 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 ACTR3CQ9C0K3 210 aaPredicted RBP15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 DFFBO76075 338 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 RND2P52198 227 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 ZNF133P52736 654 aaPredicted RBP15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 MTCP1P56278 107 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 ADIRFQ15847 76 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 SPIN3Q5JUX0 258 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 DCAF12Q5T6F0 453 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 FAM27BQ5VT28 67 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 SPINK14Q6IE38 97 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 ODF3L1Q8IXM7 274 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 Q96M66 194 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 SYT3Q9BQG1 590 aa15.18■□□□□ 0.02
SQSTM1-202ENST00000389805 ASPMQ8IZT6 3477 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms