RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 LYPD6BQ8NI32 183 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 HIST1H2AAQ96QV6 131 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 NRIP2Q9BQI9 281 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 LRFN3Q9BTN0 628 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 CACNA1HO95180 2353 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 IGSF23A1L1A6 192 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 FAM24AA6NFZ4 105 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 CDRT15L2A8MXV6 281 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 GPR137BO60478 399 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 ZNF600Q6ZNG1 722 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 DEFB124Q8NES8 71 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 TMED3Q9Y3Q3 217 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 MPC1Q9Y5U8 109 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 POMT1Q9Y6A1 747 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 ST8SIA3O43173 380 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 ADAM20O43506 726 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 CDS2O95674 445 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 CD5P06127 495 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 CCDC71LQ8N9Z2 235 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 BOD1Q96IK1 185 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 KIRREL1Q96J84 757 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 CLCF1Q9UBD9 225 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 PURGQ9UJV8 347 aaKnown RBP11.35□□□□□ -0.59
CCDC3-202ENST00000378839 PGLYRP1O75594 196 aaPredicted RBP11.35□□□□□ -0.59
CCDC3-202ENST00000378839 ACAA1P09110 424 aaPredicted RBP11.35□□□□□ -0.59
CCDC3-202ENST00000378839 P2RY1P47900 373 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 IDH3GP51553 393 aaPredicted RBP11.35□□□□□ -0.59
CCDC3-202ENST00000378839 RND3P61587 244 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 IZUMO4Q1ZYL8 232 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 NMSQ5H8A3 153 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 ZNF573Q86YE8 665 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 SCCPDHQ8NBX0 429 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 SFT2D1Q8WV19 159 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 BSNQ9UPA5 3926 aa11.35□□□□□ -0.59
CCDC3-202ENST00000378839 RNASEK-C17orf49H0YIS7 233 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 S100A9P06702 114 aaKnown RBP11.34□□□□□ -0.59
CCDC3-202ENST00000378839 FAM76BQ5HYJ3 339 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 FAM53AQ6NSI3 398 aaPredicted RBP11.34□□□□□ -0.59
CCDC3-202ENST00000378839 TMEM171Q8WVE6 324 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 GINS3Q9BRX5 216 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 PARP11Q9NR21 331 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 FAM86C1Q9NVL1 165 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 COA4Q9NYJ1 87 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 UBE2J1Q9Y385 318 aaPredicted RBP11.34□□□□□ -0.59
CCDC3-202ENST00000378839 OR5B21A6NL26 309 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 PROB1E7EW31 1015 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 AGFG2O95081 481 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 TFF1P04155 84 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 S100A6P06703 90 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 MPV17P39210 176 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 HOXA1P49639 335 aaPredicted RBP11.34□□□□□ -0.59
CCDC3-202ENST00000378839 ERVK11-1P61568 191 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 EWSR1Q01844 656 aaKnown RBP eCLIP11.34□□□□□ -0.59
CCDC3-202ENST00000378839 IL13RA2Q14627 380 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 ASCL3Q9NQ33 180 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 GLRX2Q9NS18 164 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 CEBPDP49716 269 aaPredicted RBP11.34□□□□□ -0.59
CCDC3-202ENST00000378839 GUSBP1Q15486 140 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 ZNF295-AS1Q8N0V1 137 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 GMPPAQ96IJ6 420 aaPredicted RBP11.34□□□□□ -0.59
CCDC3-202ENST00000378839 OPA3Q9H6K4 179 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 BIN3Q9NQY0 253 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 TAAR3PQ9P1P4 343 aa11.34□□□□□ -0.59
CCDC3-202ENST00000378839 OTOGLQ3ZCN5 2332 aa11.33□□□□□ -0.59
CCDC3-202ENST00000378839 EP300Q09472 2414 aaPredicted RBP11.33□□□□□ -0.6
CCDC3-202ENST00000378839 TRBV6-6A0A0A6YYG2 114 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 SIRPB1O00241 398 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 CDIPTO14735 213 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 SFTA3P0C7M3 94 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 DANCRP0C864 163 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 LMO1P25800 156 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 UCP1P25874 307 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 CD80P33681 288 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 PPT1P50897 306 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 PPP1CBP62140 327 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 PSG7Q13046 419 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 GPR157Q5UAW9 335 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 VWA1Q6PCB0 445 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 ZNF695Q8IW36 515 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 H1FOOQ8IZA3 346 aaPredicted RBP11.33□□□□□ -0.6
CCDC3-202ENST00000378839 SVBPQ8N300 66 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 ZNF565Q8N9K5 539 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 HSD17B11Q8NBQ5 300 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 SLC25A40Q8TBP6 338 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 TRIB1Q96RU8 372 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 ABHD14AQ9BUJ0 271 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 PKIBQ9C010 78 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 OR2H2O95918 312 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 EPHA1P21709 976 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 TCF15Q12870 199 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 FOXF2Q12947 444 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 ZNF154Q13106 437 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 TESK1Q15569 626 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 GABRA6Q16445 453 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 PRSS33Q8NF86 280 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 RXFP4Q8TDU9 374 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 SEC11CQ9BY50 192 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 ERRFI1Q9UJM3 462 aaPredicted RBP11.33□□□□□ -0.6
CCDC3-202ENST00000378839 GTF3C1Q12789 2109 aa11.33□□□□□ -0.6
CCDC3-202ENST00000378839 KIR2DS1A0A191URI9 304 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms