RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 ELL3Q9HB65 397 aaPredicted RBP8.14□□□□□ -1.11
TRIM39-202ENST00000376659 LYRM2Q9NU23 88 aaPredicted RBP8.14□□□□□ -1.11
TRIM39-202ENST00000376659 NDRG3Q9UGV2 375 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 NBEAQ8NFP9 2946 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 A0A1B0GW55 424 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 A0A1W2PR80 420 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 H0Y980 276 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 IGHG3P01860 377 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 DUX4L2P0CJ85 424 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 DUX4L3P0CJ86 424 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 DUX4L4P0CJ87 422 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 DUX4L5P0CJ88 424 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 DUX4L6P0CJ89 424 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 DUX4L7P0CJ90 424 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 CEACAM1P13688 526 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 MAS1LP35410 378 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 ARR3P36575 388 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 FHITP49789 147 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 EWSR1Q01844 656 aaKnown RBP eCLIP8.14□□□□□ -1.11
TRIM39-202ENST00000376659 ATP1A1-AS1Q5TC04 95 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 ZNF488Q96MN9 340 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 CALHM2Q9HA72 323 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 MBNL3Q9NUK0 354 aaKnown RBP8.14□□□□□ -1.11
TRIM39-202ENST00000376659 GSKIPQ9P0R6 139 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 DUX4Q9UBX2 424 aa8.14□□□□□ -1.11
TRIM39-202ENST00000376659 CD300LBA8K4G0 201 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 ZNF732B4DXR9 585 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 RNASEK-C17orf49H0YIS7 233 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 J3QW42 95 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 SMPD2O60906 423 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 DIRAS3O95661 229 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 MT-CO3P00414 261 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 CELA3BP08861 270 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 NDUFB7P17568 137 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 F2RL1P55085 397 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 RBMS3Q6XE24 437 aaKnown RBP8.13□□□□□ -1.11
TRIM39-202ENST00000376659 C11orf53Q8IXP5 236 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 ZFP82Q8N141 532 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 LGI3Q8N145 548 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 SLC33A1O00400 549 aaPredicted RBP8.13□□□□□ -1.11
TRIM39-202ENST00000376659 MED6O75586 246 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 SMIM6P0DI80 62 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 SLC25A6P12236 298 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 NFYBP25208 207 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 GPHA2Q96T91 129 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 WIPI2Q9Y4P8 454 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 CACNA1GO43497 2377 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 IFNA4P05014 189 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 DVL1P1P54792 670 aaPredicted RBP8.13□□□□□ -1.11
TRIM39-202ENST00000376659 FXYD4P59646 89 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 RAB1AP62820 205 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 Q6ZRG5 221 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 MDP1Q86V88 176 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 LSM5Q9Y4Y9 91 aaKnown RBP8.13□□□□□ -1.11
TRIM39-202ENST00000376659 ATMQ13315 3056 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 DCHS1Q96JQ0 3298 aa8.13□□□□□ -1.11
TRIM39-202ENST00000376659 PGLYRP1O75594 196 aaPredicted RBP8.12□□□□□ -1.11
TRIM39-202ENST00000376659 COX5AP20674 150 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 SRYQ05066 204 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 C9orf135Q5VTT2 229 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 ETV3LQ6ZN32 361 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 OR8G5Q8NG78 346 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 APH1AQ96BI3 265 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 DLL3Q9NYJ7 618 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 MPC1Q9Y5U8 109 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 ZNF407Q9C0G0 2248 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 OR5B21A6NL26 309 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 PHF1O43189 567 aaPredicted RBP8.12□□□□□ -1.11
TRIM39-202ENST00000376659 TXNL1O43396 289 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 BRWD1-AS2P59051 145 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 SPCS3P61009 180 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 HLA-DRB3P79483 266 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 ZNF146Q15072 292 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 HMGN3Q15651 99 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 TMEM88Q6PEY1 159 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 NAXEQ8NCW5 288 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 B4GALT7Q9UBV7 327 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 GTF3C1Q12789 2109 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 OR7C1O76099 320 aaPredicted RBP8.12□□□□□ -1.11
TRIM39-202ENST00000376659 IGHV2-70P01814 119 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 PGA5P0DJD9 388 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 MMP9P14780 707 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 IGHV1-2P23083 117 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 AKAP13Q12802 2813 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 FBXW9Q5XUX1 488 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 HRH4Q9H3N8 390 aa8.12□□□□□ -1.11
TRIM39-202ENST00000376659 ZNF729A6NN14 1252 aaPredicted RBP8.11□□□□□ -1.11
TRIM39-202ENST00000376659 PAX5Q02548 391 aa8.11□□□□□ -1.11
TRIM39-202ENST00000376659 ZNF585BQ52M93 769 aa8.11□□□□□ -1.11
TRIM39-202ENST00000376659 CXorf66Q5JRM2 361 aaPredicted RBP8.11□□□□□ -1.11
TRIM39-202ENST00000376659 HES3Q5TGS1 186 aa8.11□□□□□ -1.11
TRIM39-202ENST00000376659 ABHD17BQ5VST6 288 aa8.11□□□□□ -1.11
TRIM39-202ENST00000376659 Q6ZR03 302 aa8.11□□□□□ -1.11
TRIM39-202ENST00000376659 Q6ZRM9 215 aa8.11□□□□□ -1.11
TRIM39-202ENST00000376659 HAPLN4Q86UW8 402 aa8.11□□□□□ -1.11
TRIM39-202ENST00000376659 DTD1Q8TEA8 209 aa8.11□□□□□ -1.11
TRIM39-202ENST00000376659 CCL28Q9NRJ3 127 aa8.11□□□□□ -1.11
TRIM39-202ENST00000376659 IQCF6A8MYZ5 107 aa8.11□□□□□ -1.11
TRIM39-202ENST00000376659 PPIHO43447 177 aaKnown RBP8.11□□□□□ -1.11
TRIM39-202ENST00000376659 C1QL1O75973 258 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms