RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 SNX22Q96L94 193 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 SF3B5Q9BWJ5 86 aaKnown RBP18.13■□□□□ 0.49
UPF3A-202ENST00000375299 PITPNC1Q9UKF7 332 aa18.13■□□□□ 0.49
UPF3A-202ENST00000375299 H3BP45 60 aa18.12■□□□□ 0.49
UPF3A-202ENST00000375299 NAPSAO96009 420 aa18.12■□□□□ 0.49
UPF3A-202ENST00000375299 OPN1MWP04001 364 aa18.12■□□□□ 0.49
UPF3A-202ENST00000375299 OPN1MW2P0DN77 364 aa18.12■□□□□ 0.49
UPF3A-202ENST00000375299 OPN1MW3P0DN78 364 aa18.12■□□□□ 0.49
UPF3A-202ENST00000375299 CPT1CQ8TCG5 803 aa18.12■□□□□ 0.49
UPF3A-202ENST00000375299 WNT5BQ9H1J7 359 aa18.12■□□□□ 0.49
UPF3A-202ENST00000375299 CDH20Q9HBT6 801 aa18.12■□□□□ 0.49
UPF3A-202ENST00000375299 RPRMQ9NS64 109 aa18.12■□□□□ 0.49
UPF3A-202ENST00000375299 FOSL1P15407 271 aa18.12■□□□□ 0.49
UPF3A-202ENST00000375299 IL2RGP31785 369 aa18.12■□□□□ 0.49
UPF3A-202ENST00000375299 TMEM267Q0VDI3 215 aaPredicted RBP18.12■□□□□ 0.49
UPF3A-202ENST00000375299 RNPS1Q15287 305 aaKnown RBP18.12■□□□□ 0.49
UPF3A-202ENST00000375299 Q8NFD4 153 aa18.12■□□□□ 0.49
UPF3A-202ENST00000375299 CA5BP1Q8WTZ4 195 aa18.12■□□□□ 0.49
UPF3A-202ENST00000375299 ALKBH3Q96Q83 286 aaPredicted RBP18.12■□□□□ 0.49
UPF3A-202ENST00000375299 OR2H1Q9GZK4 316 aa18.12■□□□□ 0.49
UPF3A-202ENST00000375299 PROK2Q9HC23 129 aa18.12■□□□□ 0.49
UPF3A-202ENST00000375299 G3V3Y1 287 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 CLDN15P56746 228 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 RAC1P63000 192 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 PCOLCEQ15113 449 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 ZNF295-AS1Q8N0V1 137 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 MBD3L1Q8WWY6 194 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 P2RX4Q99571 388 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 SSX3Q99909 188 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 CABLES2Q9BTV7 478 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 RSG1Q9BU20 258 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 LRFN1Q9P244 771 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 A0A0G2JRQ6 117 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 TNFSF12O43508 249 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 HLA-HP01893 362 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 BCL3P20749 454 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 NTF4P34130 210 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 LCN15Q6UWW0 184 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 CTDSP1Q9GZU7 261 aa18.11■□□□□ 0.49
UPF3A-202ENST00000375299 C9J4A7 227 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 SLC31A2O15432 143 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 EDN3P14138 238 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 PAX1P15863 534 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 ZNF726P1Q15940 193 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 Q3ZCU0 254 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 TDHQ8IZJ6 230 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 FGFBP3Q8TAT2 258 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 VSIRQ9H7M9 311 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 KIR2DS1A0A191URI9 304 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 PGLYRP1O75594 196 aaPredicted RBP18.1■□□□□ 0.49
UPF3A-202ENST00000375299 JMJD7P0C870 316 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 KIR2DS4P43632 304 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 KIR2DS1Q14954 304 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 TMEM183AQ8IXX5 376 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 RNASE11Q8TAA1 199 aaKnown RBP18.1■□□□□ 0.49
UPF3A-202ENST00000375299 SCGB1C1Q8TD33 95 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 GPR146Q96CH1 333 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 RAB40CQ96S21 281 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 FOXB1Q99853 325 aa18.1■□□□□ 0.49
UPF3A-202ENST00000375299 IGKV1-6A0A0C4DH72 117 aa18.09■□□□□ 0.49
UPF3A-202ENST00000375299 TAS2R60P59551 318 aa18.09■□□□□ 0.49
UPF3A-202ENST00000375299 ZNF880Q6PDB4 577 aa18.09■□□□□ 0.49
UPF3A-202ENST00000375299 AKIRIN1Q9H9L7 192 aaPredicted RBP18.09■□□□□ 0.49
UPF3A-202ENST00000375299 RNF150Q9ULK6 438 aa18.09■□□□□ 0.49
UPF3A-202ENST00000375299 KIAA1324LA8MWY0 1029 aaPredicted RBP18.09■□□□□ 0.49
UPF3A-202ENST00000375299 ST8SIA5O15466 376 aa18.09■□□□□ 0.49
UPF3A-202ENST00000375299 CTXN2P0C2S0 81 aa18.09■□□□□ 0.49
UPF3A-202ENST00000375299 FGF8P55075 233 aaPredicted RBP18.09■□□□□ 0.49
UPF3A-202ENST00000375299 ZNF468Q5VIY5 522 aaPredicted RBP18.09■□□□□ 0.49
UPF3A-202ENST00000375299 MRPL14Q6P1L8 145 aaKnown RBP18.09■□□□□ 0.49
UPF3A-202ENST00000375299 SSX7Q7RTT5 188 aa18.09■□□□□ 0.49
UPF3A-202ENST00000375299 OR4X1Q8NH49 305 aa18.09■□□□□ 0.49
UPF3A-202ENST00000375299 GJE1A6NN92 205 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 MKRN2OSH3BPM6 223 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 DVL1O14640 695 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 DNPH1O43598 174 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 SLC25A6P12236 298 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 MDKP21741 143 aaPredicted RBP18.08■□□□□ 0.48
UPF3A-202ENST00000375299 F2RP25116 425 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 RAC3P60763 192 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 JOSD1Q15040 202 aaPredicted RBP18.08■□□□□ 0.48
UPF3A-202ENST00000375299 SPEM1Q8N4L4 309 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 OR10A7Q8NGE5 316 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 SPSB4Q96A44 273 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 PSMG3Q9BT73 122 aaPredicted RBP18.08■□□□□ 0.48
UPF3A-202ENST00000375299 WNT16Q9UBV4 365 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 VAX2Q9UIW0 290 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 ATP23Q9Y6H3 246 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 CNOT4O95628 575 aaKnown RBP18.08■□□□□ 0.48
UPF3A-202ENST00000375299 FGF12P61328 243 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 PCBD1P61457 104 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 ACSF3Q4G176 576 aaPredicted RBP18.08■□□□□ 0.48
UPF3A-202ENST00000375299 GUSBP11Q6P575 273 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 AAED1Q7RTV5 226 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 C17orf78Q8N4C9 275 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 GPR87Q9BY21 358 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 SRD5A3Q9H8P0 318 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 OR14J1Q9UGF5 321 aa18.08■□□□□ 0.48
UPF3A-202ENST00000375299 CEACAM16Q2WEN9 425 aa18.07■□□□□ 0.48
UPF3A-202ENST00000375299 SMOC1Q9H4F8 434 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms