RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 DHDHQ9UQ10 334 aa11.04□□□□□ -0.64
PTCH1-202ENST00000375271 TRAV39A0A0B4J263 110 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 TRAV24A0A0B4J272 114 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 SNTNA6NMZ2 147 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 NPIPB11E5RHQ5 1161 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 J3QLW9 94 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 SLC16A6O15403 523 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 OR7C1O76099 320 aaPredicted RBP11.03□□□□□ -0.64
PTCH1-202ENST00000375271 FRMD6-AS1P0C7T7 363 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 CGB3P0DN86 165 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 CGB7P0DN87 165 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 ZNF19P17023 458 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 MYF6P23409 242 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 EPHA2P29317 976 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 CCR9P51686 369 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 EFNB1P98172 346 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 ZNF85Q03923 595 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 RSBN1Q5VWQ0 802 aaPredicted RBP11.03□□□□□ -0.64
PTCH1-202ENST00000375271 OR51A4Q8NGJ6 313 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 RTN4IP1Q8WWV3 396 aaPredicted RBP11.03□□□□□ -0.64
PTCH1-202ENST00000375271 UBE2E2Q96LR5 201 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 CHCHD6Q9BRQ6 235 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 DPCDQ9BVM2 203 aaPredicted RBP11.03□□□□□ -0.64
PTCH1-202ENST00000375271 LINC00574Q9H8X3 128 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 ERGIC3Q9Y282 383 aa11.03□□□□□ -0.64
PTCH1-202ENST00000375271 TCRBV3S1A0A5B6 114 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 ATP8B1O43520 1251 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 HTR3BO95264 441 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 SLC2A2P11168 524 aaPredicted RBP11.02□□□□□ -0.65
PTCH1-202ENST00000375271 RAB3AP20336 220 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 FASP25445 335 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 PSMB8P28062 276 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 MMDQ15546 238 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 SRSF7Q16629 238 aaKnown RBP eCLIP11.02□□□□□ -0.65
PTCH1-202ENST00000375271 PIGYQ3MUY2 71 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 ATAD3CQ5T2N8 411 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 KDM4DQ6B0I6 523 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 Q8N6K4 173 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 PXT1Q8NFP0 134 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 OR10AC1Q8NH08 325 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 PLPPR1Q8TBJ4 325 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 C4orf36Q96KX1 117 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 HSPB9Q9BQS6 159 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 PARP11Q9NR21 331 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 GNG12Q9UBI6 72 aa11.02□□□□□ -0.65
PTCH1-202ENST00000375271 GP9P14770 177 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 GYS2P54840 703 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 NANOS3P60323 173 aaKnown RBP11.01□□□□□ -0.65
PTCH1-202ENST00000375271 ALKBH1Q13686 389 aaKnown RBP11.01□□□□□ -0.65
PTCH1-202ENST00000375271 ATP6AP1Q15904 470 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 ELP2Q6IA86 826 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 FDX2Q6P4F2 183 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 SUMF2Q8NBJ7 301 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 OR52M1Q8NGK5 317 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 OR10K1Q8NGX5 313 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 EME1Q96AY2 570 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 CITED4Q96RK1 184 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 CIB1Q99828 191 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 METTL9Q9H1A3 318 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 OR51J1Q9H342 316 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 PAK1IP1Q9NWT1 392 aaPredicted RBP11.01□□□□□ -0.65
PTCH1-202ENST00000375271 POMPQ9Y244 141 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 ST3GAL6Q9Y274 331 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 ORC6Q9Y5N6 252 aa11.01□□□□□ -0.65
PTCH1-202ENST00000375271 SORL1Q92673 2214 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 IGHV3-43A0A0B4J1X8 118 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 TMEM212A6NML5 194 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 AIPO00170 330 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 SPINT2O43291 252 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 JTBO76095 146 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 IGF1P05019 195 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 IGHV3-43DP0DP04 118 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 FCGR1AP12314 374 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 SPNP16150 400 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 PITPNAQ00169 270 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 PAX5Q02548 391 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 SGPP2Q8IWX5 399 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 LINC00311Q8N616 119 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 OR5AK2Q8NH90 309 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 UBALD1Q8TB05 177 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 CCDC107Q8WV48 283 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 DCUN1D4Q92564 292 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 OR4C12Q96R67 309 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 ZNF251Q9BRH9 671 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 GABARAPL1Q9H0R8 117 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 GFOD1Q9NXC2 390 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 GAR1Q9NY12 217 aaKnown RBP11□□□□□ -0.65
PTCH1-202ENST00000375271 KIAA1456Q9P272 454 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 ING4Q9UNL4 249 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 MRPS28Q9Y2Q9 187 aaKnown RBP11□□□□□ -0.65
PTCH1-202ENST00000375271 WSB1Q9Y6I7 421 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 TENM2Q9NT68 2774 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 RYR2Q92736 4967 aa11□□□□□ -0.65
PTCH1-202ENST00000375271 GABRPO00591 440 aa10.99□□□□□ -0.65
PTCH1-202ENST00000375271 LDLRAD4O15165 306 aa10.99□□□□□ -0.65
PTCH1-202ENST00000375271 CD2P06729 351 aa10.99□□□□□ -0.65
PTCH1-202ENST00000375271 OR8U9P0C7N5 309 aa10.99□□□□□ -0.65
PTCH1-202ENST00000375271 T-ENOLP0DO92 83 aa10.99□□□□□ -0.65
PTCH1-202ENST00000375271 PPP3R1P63098 170 aa10.99□□□□□ -0.65
PTCH1-202ENST00000375271 CFHR3Q02985 330 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms