RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 OR5D13Q8NGL4 314 aa14.02□□□□□ -0.16
SDC4-201ENST00000372733 OR51H1Q8NH63 302 aa14.02□□□□□ -0.16
SDC4-201ENST00000372733 RPRMQ9NS64 109 aa14.02□□□□□ -0.16
SDC4-201ENST00000372733 GFOD1Q9NXC2 390 aa14.02□□□□□ -0.16
SDC4-201ENST00000372733 GJE1A6NN92 205 aa14.02□□□□□ -0.17
SDC4-201ENST00000372733 H0Y980 276 aa14.02□□□□□ -0.17
SDC4-201ENST00000372733 MDKP21741 143 aaPredicted RBP14.02□□□□□ -0.17
SDC4-201ENST00000372733 FOXO1Q12778 655 aa14.02□□□□□ -0.17
SDC4-201ENST00000372733 GAMTQ14353 236 aa14.02□□□□□ -0.17
SDC4-201ENST00000372733 SSX7Q7RTT5 188 aa14.02□□□□□ -0.17
SDC4-201ENST00000372733 RPS19BP1Q86WX3 136 aaKnown RBP14.02□□□□□ -0.17
SDC4-201ENST00000372733 GPR35Q9HC97 309 aa14.02□□□□□ -0.17
SDC4-201ENST00000372733 C3orf80F5H4A9 247 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 PGLYRP1O75594 196 aaPredicted RBP14.01□□□□□ -0.17
SDC4-201ENST00000372733 HIST1H1BP16401 226 aaKnown RBP14.01□□□□□ -0.17
SDC4-201ENST00000372733 CCNOP22674 350 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 EPHA8P29322 1005 aaPredicted RBP14.01□□□□□ -0.17
SDC4-201ENST00000372733 ZNF787Q6DD87 383 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 DPPA3Q6W0C5 159 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 GPR146Q96CH1 333 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 TECTBQ96PL2 329 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 WDR54Q9H977 334 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 OR5H1A6NKK0 313 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 IFNA5P01569 189 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 MMP7P09237 267 aaPredicted RBP14.01□□□□□ -0.17
SDC4-201ENST00000372733 BCL2P10415 239 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 CCL2P13500 99 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 FGF12P61328 243 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 PRDX4Q13162 271 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 OR8G1Q15617 311 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 ZNF726P1Q15940 193 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 FAM180AQ6UWF9 173 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 OR13D1Q8NGV5 346 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 OR10D3Q8NH80 312 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 ABHD3Q8WU67 409 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 SPSB4Q96A44 273 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 ZNF407Q9C0G0 2248 aa14.01□□□□□ -0.17
SDC4-201ENST00000372733 ELOA3CA0A087WX78 387 aaPredicted RBP14□□□□□ -0.17
SDC4-201ENST00000372733 DFFBO76075 338 aa14□□□□□ -0.17
SDC4-201ENST00000372733 RFPL3SP0C7P2 107 aa14□□□□□ -0.17
SDC4-201ENST00000372733 CLDN15P56746 228 aa14□□□□□ -0.17
SDC4-201ENST00000372733 PCBD1P61457 104 aa14□□□□□ -0.17
SDC4-201ENST00000372733 Q8NFD4 153 aa14□□□□□ -0.17
SDC4-201ENST00000372733 C1QTNF5Q9BXJ0 243 aa14□□□□□ -0.17
SDC4-201ENST00000372733 FREM2Q5SZK8 3169 aa14□□□□□ -0.17
SDC4-201ENST00000372733 TRAV1-1A0A0B4J248 108 aa14□□□□□ -0.17
SDC4-201ENST00000372733 A0A1B0GU03 582 aa14□□□□□ -0.17
SDC4-201ENST00000372733 DNPH1O43598 174 aa14□□□□□ -0.17
SDC4-201ENST00000372733 IAPPP10997 89 aa14□□□□□ -0.17
SDC4-201ENST00000372733 ZFP36L1Q07352 338 aaKnown RBP14□□□□□ -0.17
SDC4-201ENST00000372733 C9orf135Q5VTT2 229 aa14□□□□□ -0.17
SDC4-201ENST00000372733 C20orf204Q6ZNR8 217 aa14□□□□□ -0.17
SDC4-201ENST00000372733 OR10G4Q8NGN3 311 aa14□□□□□ -0.17
SDC4-201ENST00000372733 RNASE11Q8TAA1 199 aaKnown RBP14□□□□□ -0.17
SDC4-201ENST00000372733 SNX22Q96L94 193 aa14□□□□□ -0.17
SDC4-201ENST00000372733 HIPK2Q9H2X6 1198 aa14□□□□□ -0.17
SDC4-201ENST00000372733 MTCH1Q9NZJ7 389 aa14□□□□□ -0.17
SDC4-201ENST00000372733 NCKAP5O14513 1909 aa14□□□□□ -0.17
SDC4-201ENST00000372733 KIR2DS1A0A191URI9 304 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 FAM90A10PA6NDY2 464 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 FAM90A18PA6NE21 464 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 FAM90A16PA6NEW6 464 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 FAM90A20PA6NIJ5 464 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 FAM90A8PA6NJQ4 464 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 FAM90A7PA6NKC0 464 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 FAM90A22PA8MWA6 464 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 FAM90A12PA8MX19 464 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 FAM90A5PA8MXJ8 464 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 FAM90A23PA8MXZ1 464 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 KLF7O75840 302 aaPredicted RBP13.99□□□□□ -0.17
SDC4-201ENST00000372733 PTBP3O95758 552 aaKnown RBP13.99□□□□□ -0.17
SDC4-201ENST00000372733 FAM90A15PP0C7V4 464 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 FAM90A13PP0C7W8 464 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 FAM90A14PP0C7W9 464 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 FAM90A24PP0C7X0 464 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 PSG2P11465 335 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 F2RP25116 425 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 KIR2DS4P43632 304 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 KIR2DS1Q14954 304 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 ABLIM2Q6H8Q1 611 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 UNQ6494/PRO21346Q6UXR6 183 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 Q6ZRM9 215 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 H1FOOQ8IZA3 346 aaPredicted RBP13.99□□□□□ -0.17
SDC4-201ENST00000372733 C14orf144Q96I85 54 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 ZNF845Q96IR2 970 aaPredicted RBP13.99□□□□□ -0.17
SDC4-201ENST00000372733 ATP23Q9Y6H3 246 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 B4DEV8 164 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 PGA5P0DJD9 388 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 MLF1P58340 268 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 ARL16Q0P5N6 197 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 WIPI1Q5MNZ9 446 aaPredicted RBP13.99□□□□□ -0.17
SDC4-201ENST00000372733 ZNF880Q6PDB4 577 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 ZNF488Q96MN9 340 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 PRO1933Q9H354 126 aa13.99□□□□□ -0.17
SDC4-201ENST00000372733 CISD1Q9NZ45 108 aaKnown RBP13.99□□□□□ -0.17
SDC4-201ENST00000372733 KIAA1324LA8MWY0 1029 aaPredicted RBP13.98□□□□□ -0.17
SDC4-201ENST00000372733 CLDN34H7C241 214 aa13.98□□□□□ -0.17
SDC4-201ENST00000372733 CYB5R3P00387 301 aaPredicted RBP13.98□□□□□ -0.17
SDC4-201ENST00000372733 METTL15P1P0C7V9 234 aa13.98□□□□□ -0.17
SDC4-201ENST00000372733 SRD5A2P31213 254 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms