RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 RFESDQ8TAC1 157 aa18.13■□□□□ 0.49
SHMT1-203ENST00000354098 UBALD1Q8TB05 177 aa18.13■□□□□ 0.49
SHMT1-203ENST00000354098 DCUN1D5Q9BTE7 237 aa18.13■□□□□ 0.49
SHMT1-203ENST00000354098 GAL3ST2Q9H3Q3 398 aa18.13■□□□□ 0.49
SHMT1-203ENST00000354098 UNKLQ9H9P5 680 aaKnown RBP18.13■□□□□ 0.49
SHMT1-203ENST00000354098 CALYQ9NYX4 217 aa18.13■□□□□ 0.49
SHMT1-203ENST00000354098 KBTBD11-OT1A0A1B0GTJ5 212 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 ZNF729A6NN14 1252 aaPredicted RBP18.12■□□□□ 0.49
SHMT1-203ENST00000354098 RNASEK-C17orf49H0YIS7 233 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 HOXB4P17483 251 aaPredicted RBP18.12■□□□□ 0.49
SHMT1-203ENST00000354098 SRP14P37108 136 aaKnown RBP18.12■□□□□ 0.49
SHMT1-203ENST00000354098 HCP5Q6MZN7 132 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 MZT2AQ6P582 158 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 IZUMO1Q8IYV9 350 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 PHF21AQ96BD5 680 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 DGCR14Q96DF8 476 aaKnown RBP18.12■□□□□ 0.49
SHMT1-203ENST00000354098 S100A16Q96FQ6 103 aaKnown RBP18.12■□□□□ 0.49
SHMT1-203ENST00000354098 CMSS1Q9BQ75 279 aaKnown RBP18.12■□□□□ 0.49
SHMT1-203ENST00000354098 SLIRPQ9GZT3 109 aaKnown RBP18.12■□□□□ 0.49
SHMT1-203ENST00000354098 CHMP1AQ9HD42 196 aaPredicted RBP18.12■□□□□ 0.49
SHMT1-203ENST00000354098 NDUFA13Q9P0J0 144 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 TRAV18A0A075B6X5 111 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 hCG_1809904A0A1W2PP81 198 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 A0A1W2PPE2 198 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 A0A1W2PR64 198 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 A0A1W2PRV1 198 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 CRLF1O75462 422 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 CLPXO76031 633 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 SCGNO76038 276 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 RBP4P02753 201 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 ELK1P19419 428 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 GZMHP20718 246 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 ZNF260Q3ZCT1 412 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 CHRFAM7AQ494W8 412 aa18.12■□□□□ 0.49
SHMT1-203ENST00000354098 MBNL3Q9NUK0 354 aaKnown RBP18.12■□□□□ 0.49
SHMT1-203ENST00000354098 C15orf65H3BRN8 121 aa18.11■□□□□ 0.49
SHMT1-203ENST00000354098 UTF1Q5T230 341 aa18.11■□□□□ 0.49
SHMT1-203ENST00000354098 HEPN1Q6WQI6 88 aa18.11■□□□□ 0.49
SHMT1-203ENST00000354098 BRD3OSQ6XYD6 125 aa18.11■□□□□ 0.49
SHMT1-203ENST00000354098 SETD6Q8TBK2 473 aa18.11■□□□□ 0.49
SHMT1-203ENST00000354098 ARL11Q969Q4 196 aa18.11■□□□□ 0.49
SHMT1-203ENST00000354098 DIABLOQ9NR28 239 aa18.11■□□□□ 0.49
SHMT1-203ENST00000354098 A0A1W2PRD5 423 aa18.1■□□□□ 0.49
SHMT1-203ENST00000354098 A0A1W2PRF3 423 aa18.1■□□□□ 0.49
SHMT1-203ENST00000354098 A0A1W2PRM7 423 aa18.1■□□□□ 0.49
SHMT1-203ENST00000354098 TMEM235A6NFC5 223 aa18.1■□□□□ 0.49
SHMT1-203ENST00000354098 SERPINE3A8MV23 424 aa18.1■□□□□ 0.49
SHMT1-203ENST00000354098 C12orf77C9JDV5 145 aa18.1■□□□□ 0.49
SHMT1-203ENST00000354098 NPIPB11E5RHQ5 1161 aa18.1■□□□□ 0.49
SHMT1-203ENST00000354098 CTDSP2O14595 271 aa18.1■□□□□ 0.49
SHMT1-203ENST00000354098 LTC4SQ16873 150 aa18.1■□□□□ 0.49
SHMT1-203ENST00000354098 RUSC1-AS1Q66K80 236 aa18.1■□□□□ 0.49
SHMT1-203ENST00000354098 PNKDQ8N490 385 aa18.1■□□□□ 0.49
SHMT1-203ENST00000354098 CMTM3Q96MX0 182 aa18.1■□□□□ 0.49
SHMT1-203ENST00000354098 LINC00574Q9H8X3 128 aa18.1■□□□□ 0.49
SHMT1-203ENST00000354098 C12orf4Q9NQ89 552 aa18.1■□□□□ 0.49
SHMT1-203ENST00000354098 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.1■□□□□ 0.49
SHMT1-203ENST00000354098 NUP50Q9UKX7 468 aa18.1■□□□□ 0.49
SHMT1-203ENST00000354098 SOX21Q9Y651 276 aaPredicted RBP18.1■□□□□ 0.49
SHMT1-203ENST00000354098 A0A0A6YYH2 397 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 FAM172BPA6NC97 362 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 A6NJ64 397 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 XRCC3O43542 346 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 APOA1P02647 267 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 CD3GP09693 182 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 PTHLHP12272 177 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 COX7A1P24310 79 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 GPR157Q5UAW9 335 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 ZNF880Q6PDB4 577 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 PRR18Q8N4B5 295 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 C22orf15Q8WYQ4 148 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 KIRREL1Q96J84 757 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 MIXL1Q9H2W2 232 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 RIMS4Q9H426 269 aaPredicted RBP18.09■□□□□ 0.49
SHMT1-203ENST00000354098 TAF9BQ9HBM6 251 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 SESN1Q9Y6P5 492 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 TRBV6-6A0A0A6YYG2 114 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 ORC5O43913 435 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 GSTP1P09211 210 aaKnown RBP18.09■□□□□ 0.49
SHMT1-203ENST00000354098 SRD5A1P18405 259 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 ARFRP1Q13795 201 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 C6orf183Q5T699 404 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 HACD4Q5VWC8 232 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 TEX29Q8N6K0 151 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 SUCNR1Q9BXA5 334 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 IDI2-AS1Q9NZ38 188 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 ZNF69Q9UC07 566 aa18.09■□□□□ 0.49
SHMT1-203ENST00000354098 MXRA5Q9NR99 2828 aa18.08■□□□□ 0.49
SHMT1-203ENST00000354098 IGHV1-69DA0A0B4J2H0 117 aa18.08■□□□□ 0.48
SHMT1-203ENST00000354098 A6NHS1 94 aa18.08■□□□□ 0.48
SHMT1-203ENST00000354098 RGS5O15539 181 aa18.08■□□□□ 0.48
SHMT1-203ENST00000354098 IGHV1-69P01742 117 aa18.08■□□□□ 0.48
SHMT1-203ENST00000354098 MADCAM1Q13477 382 aa18.08■□□□□ 0.48
SHMT1-203ENST00000354098 ARL6IP1Q15041 203 aa18.08■□□□□ 0.48
SHMT1-203ENST00000354098 NCR3LG1Q68D85 454 aa18.08■□□□□ 0.48
SHMT1-203ENST00000354098 FAM53AQ6NSI3 398 aaPredicted RBP18.08■□□□□ 0.48
SHMT1-203ENST00000354098 LAX1Q8IWV1 398 aa18.08■□□□□ 0.48
SHMT1-203ENST00000354098 BCL6BQ8N143 479 aaPredicted RBP18.08■□□□□ 0.48
SHMT1-203ENST00000354098 OR1L1Q8NH94 360 aa18.08■□□□□ 0.48
SHMT1-203ENST00000354098 NUDCD2Q8WVJ2 157 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms