RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ZNF705AQ6ZN79 300 aaPredicted RBP5.83□□□□□ -1.48
VPS39-202ENST00000348544 MRGPRGQ86SM5 289 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 HAPLN4Q86UW8 402 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 GAPTQ8N292 157 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 RPUSD4Q96CM3 377 aaKnown RBP5.83□□□□□ -1.48
VPS39-202ENST00000348544 RASL10BQ96S79 203 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 LPAR2Q9HBW0 351 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 MAP1LC3B2A6NCE7 125 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 LILRA1O75019 489 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 GGCTO75223 188 aaKnown RBP5.83□□□□□ -1.48
VPS39-202ENST00000348544 IFNA5P01569 189 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 THEGLP0DJG4 465 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 VDAC1P21796 283 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 UCP1P25874 307 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 BRS3P32247 399 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 MDH2P40926 338 aaKnown RBP5.83□□□□□ -1.48
VPS39-202ENST00000348544 ZNF92Q03936 586 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 C17orf67Q0P5P2 114 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 SPIN3Q5JUX0 258 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 CHCHD2P9Q5T1J5 151 aaPredicted RBP5.83□□□□□ -1.48
VPS39-202ENST00000348544 DMRTA1Q5VZB9 504 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 ASCL4Q6XD76 172 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 CALHM1Q8IU99 346 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 BATF2Q8N1L9 274 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 MAP1LC3BQ9GZQ8 125 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 RNF208Q9H0X6 261 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 FER1L5A0AVI2 2057 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 M0QZK8 103 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 M0R135 149 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 YPEL1O60688 119 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 ZNF737O75373 536 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 IGKV1D-33P01593 117 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 IGKV1-33P01594 117 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 LCATP04180 440 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 TYMSP04818 313 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 EDN3P14138 238 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 CNN1P51911 297 aaKnown RBP5.82□□□□□ -1.48
VPS39-202ENST00000348544 MEF2BQ02080 365 aaPredicted RBP5.82□□□□□ -1.48
VPS39-202ENST00000348544 DLX2Q07687 328 aaPredicted RBP5.82□□□□□ -1.48
VPS39-202ENST00000348544 PLPPR5Q32ZL2 321 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 ACOT6Q3I5F7 207 aaPredicted RBP5.82□□□□□ -1.48
VPS39-202ENST00000348544 SLC25A24Q6NUK1 477 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 FAM180AQ6UWF9 173 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 PARM1Q6UWI2 310 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 SHISA6Q6ZSJ9 500 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 ZNF525Q8N782 197 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 NABP1Q96AH0 204 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 SDSLQ96GA7 329 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 ZNF799Q96GE5 643 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 YPEL2Q96QA6 119 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 OR5B12Q96R08 314 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 TBX15Q96SF7 602 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 LRRC61Q9BV99 259 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 PARLQ9H300 379 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 WNT16Q9UBV4 365 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 ST3GAL6Q9Y274 331 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 GON4LQ3T8J9 2241 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 TRANK1O15050 2925 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 SPTY2D1-AS1A0A0U1RR47 76 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 PDCD6O75340 191 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 IGHV4-34P06331 123 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 MSR1P21757 451 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 OR10J1P30954 320 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 SUMO3P55854 103 aaPredicted RBP5.82□□□□□ -1.48
VPS39-202ENST00000348544 RPL15P61313 204 aaKnown RBP5.82□□□□□ -1.48
VPS39-202ENST00000348544 NOGQ13253 232 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 TRA2AQ13595 282 aaKnown RBP eCLIP5.82□□□□□ -1.48
VPS39-202ENST00000348544 RNPS1Q15287 305 aaKnown RBP5.82□□□□□ -1.48
VPS39-202ENST00000348544 C1orf53Q5VUE5 145 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 ALKBH2Q6NS38 261 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 CARFQ8N187 725 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 OSR2Q8N2R0 312 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 ADPRHL1Q8NDY3 354 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 OR2T10Q8NGZ9 312 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 DTD1Q8TEA8 209 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 GATAD1Q8WUU5 269 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 SPSB1Q96BD6 273 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 C10orf35Q96D05 121 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 OR51I2Q9H344 312 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 CCL28Q9NRJ3 127 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 PLSCR2Q9NRY7 297 aa5.82□□□□□ -1.48
VPS39-202ENST00000348544 SLC22A20A6NK97 555 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 HMGB3O15347 200 aaKnown RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 IL6RP08887 468 aaPredicted RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 CCL5P13501 91 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 IL3RAP26951 378 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 GCH1P30793 250 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 TNFSF10P50591 281 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 RPS18P62269 152 aaKnown RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 HIST1H3AP68431 136 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 OR8B8Q15620 311 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 ACSF3Q4G176 576 aaPredicted RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 TMEM41BQ5BJD5 291 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 TMEM211Q6ICI0 200 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 Q6ZRM9 215 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 CISD2Q8N5K1 135 aaKnown RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 RPP25LQ8N5L8 163 aaKnown RBP5.81□□□□□ -1.48
VPS39-202ENST00000348544 ARL6IP6Q8N6S5 226 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 GJC3Q8NFK1 279 aa5.81□□□□□ -1.48
VPS39-202ENST00000348544 GPR146Q96CH1 333 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms