RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ETV3LQ6ZN32 361 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 HSD17B11Q8NBQ5 300 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 GMPPAQ96IJ6 420 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-201ENST00000343916 KIRREL1Q96J84 757 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 TMEM56Q96MV1 263 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 IFT22Q9H7X7 185 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 TMEM56-RWDD3S4R434 201 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 FAM24AA6NFZ4 105 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 SMPD2O60906 423 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 C1QL1O75973 258 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 SWI5Q1ZZU3 235 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 CXorf66Q5JRM2 361 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-201ENST00000343916 PRR18Q8N4B5 295 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 TRIB1Q96RU8 372 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 SPACA1Q9HBV2 294 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 SVILO95425 2214 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 MED19A0JLT2 244 aaPredicted RBP16.45■□□□□ 0.22
COL9A3-201ENST00000343916 C9JQL5 133 aa16.45■□□□□ 0.22
COL9A3-201ENST00000343916 RNASEK-C17orf49H0YIS7 233 aa16.45■□□□□ 0.22
COL9A3-201ENST00000343916 CD80P33681 288 aa16.45■□□□□ 0.22
COL9A3-201ENST00000343916 GPR157Q5UAW9 335 aa16.45■□□□□ 0.22
COL9A3-201ENST00000343916 UBALD1Q8TB05 177 aa16.45■□□□□ 0.22
COL9A3-201ENST00000343916 PARP11Q9NR21 331 aa16.45■□□□□ 0.22
COL9A3-201ENST00000343916 GTF3C1Q12789 2109 aa16.45■□□□□ 0.22
COL9A3-201ENST00000343916 KIAA2026Q5HYC2 2103 aa16.45■□□□□ 0.22
COL9A3-201ENST00000343916 DEGS1O15121 323 aa16.45■□□□□ 0.22
COL9A3-201ENST00000343916 CDS2O95674 445 aa16.45■□□□□ 0.22
COL9A3-201ENST00000343916 WT1P19544 449 aaPredicted RBP16.45■□□□□ 0.22
COL9A3-201ENST00000343916 AKR1C3P42330 323 aa16.45■□□□□ 0.22
COL9A3-201ENST00000343916 NKX2-1P43699 371 aaPredicted RBP16.45■□□□□ 0.22
COL9A3-201ENST00000343916 F2RL1P55085 397 aa16.45■□□□□ 0.22
COL9A3-201ENST00000343916 PPP1CBP62140 327 aa16.45■□□□□ 0.22
COL9A3-201ENST00000343916 SRPXP78539 464 aa16.45■□□□□ 0.22
COL9A3-201ENST00000343916 J3QT63 122 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 SIRPB1O00241 398 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 SSSCA1O60232 199 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 OMGP23515 440 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 MEOX2P50222 304 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 UBE2NP61088 152 aaKnown RBP16.44■□□□□ 0.22
COL9A3-201ENST00000343916 RND3P61587 244 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 LINC00596Q86U02 117 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 SCCPDHQ8NBX0 429 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 OR10J5Q8NHC4 309 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 SFT2D1Q8WV19 159 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 BOD1Q96IK1 185 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 PKIBQ9C010 78 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 ARV1Q9H2C2 271 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 OR1A1Q9P1Q5 309 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 BORCS7-ASMTA0A0B4J1R7 106 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 CDIPTO14735 213 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 CTXN2P0C2S0 81 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 EWSR1Q01844 656 aaKnown RBP eCLIP16.44■□□□□ 0.22
COL9A3-201ENST00000343916 ZNF616Q08AN1 781 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 CLINT1Q14677 625 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 PEA15Q15121 130 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 CMTM1Q8IZ96 169 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 OR2C3Q8N628 320 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 CNEP1R1Q8N9A8 125 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 FAM212BQ9NTI7 297 aaPredicted RBP16.44■□□□□ 0.22
COL9A3-201ENST00000343916 ERRFI1Q9UJM3 462 aaPredicted RBP16.44■□□□□ 0.22
COL9A3-201ENST00000343916 RFNGQ9Y644 331 aa16.44■□□□□ 0.22
COL9A3-201ENST00000343916 CDRT15L2A8MXV6 281 aa16.43■□□□□ 0.22
COL9A3-201ENST00000343916 PGLYRP1O75594 196 aaPredicted RBP16.43■□□□□ 0.22
COL9A3-201ENST00000343916 FTH1P19P0C7X4 201 aa16.43■□□□□ 0.22
COL9A3-201ENST00000343916 HOXA4Q00056 320 aaPredicted RBP16.43■□□□□ 0.22
COL9A3-201ENST00000343916 Q6P435 159 aa16.43■□□□□ 0.22
COL9A3-201ENST00000343916 OR51H1Q8NH63 302 aa16.43■□□□□ 0.22
COL9A3-201ENST00000343916 SLC25A40Q8TBP6 338 aa16.43■□□□□ 0.22
COL9A3-201ENST00000343916 RTL8AQ9BWD3 113 aa16.43■□□□□ 0.22
COL9A3-201ENST00000343916 RIMS4Q9H426 269 aaPredicted RBP16.43■□□□□ 0.22
COL9A3-201ENST00000343916 CDH20Q9HBT6 801 aa16.43■□□□□ 0.22
COL9A3-201ENST00000343916 CLCF1Q9UBD9 225 aa16.43■□□□□ 0.22
COL9A3-201ENST00000343916 UCP1P25874 307 aa16.43■□□□□ 0.22
COL9A3-201ENST00000343916 HLA-DRB3P79483 266 aa16.43■□□□□ 0.22
COL9A3-201ENST00000343916 ZNF154Q13106 437 aa16.43■□□□□ 0.22
COL9A3-201ENST00000343916 ZNF324BQ6AW86 544 aaPredicted RBP16.43■□□□□ 0.22
COL9A3-201ENST00000343916 PLPPR1Q8TBJ4 325 aa16.43■□□□□ 0.22
COL9A3-201ENST00000343916 GTF3AQ92664 365 aaKnown RBP16.43■□□□□ 0.22
COL9A3-201ENST00000343916 C11orf1Q9H5F2 150 aa16.43■□□□□ 0.22
COL9A3-201ENST00000343916 PARD6AQ9NPB6 346 aa16.43■□□□□ 0.22
COL9A3-201ENST00000343916 OR2W1Q9Y3N9 320 aa16.43■□□□□ 0.22
COL9A3-201ENST00000343916 IGSF23A1L1A6 192 aa16.42■□□□□ 0.22
COL9A3-201ENST00000343916 COLCA2A8K830 154 aa16.42■□□□□ 0.22
COL9A3-201ENST00000343916 H0YL77 283 aa16.42■□□□□ 0.22
COL9A3-201ENST00000343916 OR2H2O95918 312 aa16.42■□□□□ 0.22
COL9A3-201ENST00000343916 HEXAP06865 529 aa16.42■□□□□ 0.22
COL9A3-201ENST00000343916 MIDNQ504T8 468 aa16.42■□□□□ 0.22
COL9A3-201ENST00000343916 NMSQ5H8A3 153 aa16.42■□□□□ 0.22
COL9A3-201ENST00000343916 GINS3Q9BRX5 216 aa16.42■□□□□ 0.22
COL9A3-201ENST00000343916 CD5P06127 495 aa16.42■□□□□ 0.22
COL9A3-201ENST00000343916 SEC11BP0C7V7 166 aa16.42■□□□□ 0.22
COL9A3-201ENST00000343916 DANCRP0C864 163 aa16.42■□□□□ 0.22
COL9A3-201ENST00000343916 TGFBR3Q03167 851 aa16.42■□□□□ 0.22
COL9A3-201ENST00000343916 FAM214BQ7L5A3 538 aa16.42■□□□□ 0.22
COL9A3-201ENST00000343916 PIP4P1Q86T03 277 aa16.42■□□□□ 0.22
COL9A3-201ENST00000343916 EIF3GO75821 320 aaKnown RBP eCLIP16.41■□□□□ 0.22
COL9A3-201ENST00000343916 AGFG2O95081 481 aa16.41■□□□□ 0.22
COL9A3-201ENST00000343916 GRPP07492 148 aa16.41■□□□□ 0.22
COL9A3-201ENST00000343916 SNRPEP62304 92 aaKnown RBP16.41■□□□□ 0.22
COL9A3-201ENST00000343916 MRPL49Q13405 166 aaKnown RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms