RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 SCN3AQ9NY46 2000 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 LRRC3CA6NJW4 275 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 ZNF814B7Z6K7 855 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 HS3ST1O14792 307 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 ZNF737O75373 536 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 GYPAP02724 150 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 CT62P0C5K7 136 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 CTLA4P16410 223 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 IL3RAP26951 378 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 CTRLP40313 264 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 GABRA2P47869 451 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 DAP3P51398 398 aaKnown RBP7.04□□□□□ -1.28
ATG4A-201ENST00000343524 HERV-K104P61576 105 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 RHOGP84095 191 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 EGR4Q05215 589 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 FOXL1Q12952 345 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 SHBQ15464 509 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 PLPPR5Q32ZL2 321 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 Q6ZWC4 215 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 MCEMP1Q8IX19 187 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 SIGLECL1Q8N7X8 197 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 ZNF709Q8N972 641 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 VN1R17PQ8TDU5 208 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 RERGQ96A58 199 aaPredicted RBP7.04□□□□□ -1.28
ATG4A-201ENST00000343524 NRTNQ99748 197 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 HSPB9Q9BQS6 159 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 CST9LQ9H4G1 147 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 PATZ1Q9HBE1 687 aaKnown RBP7.04□□□□□ -1.28
ATG4A-201ENST00000343524 ZNF286AQ9HBT8 521 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 MRPL27Q9P0M9 148 aaKnown RBP7.04□□□□□ -1.28
ATG4A-201ENST00000343524 LRRK1Q38SD2 2015 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 FRYLO94915 3013 aa7.04□□□□□ -1.28
ATG4A-201ENST00000343524 NPIPB13A6NJU9 1138 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 ZNF850A8MQ14 1090 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 NPIPB4C9JG80 1138 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 C11orf98E9PRG8 122 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 K7EQS6 105 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 TNFRSF10CO14798 259 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 LILRA1O75019 489 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 NRASP01111 189 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 KRASP01116 189 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 IGLC2P0DOY2 106 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 IGLC3P0DOY3 106 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 OMGP23515 440 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 PEBP1P30086 187 aaKnown RBP7.03□□□□□ -1.28
ATG4A-201ENST00000343524 MDH2P40926 338 aaKnown RBP7.03□□□□□ -1.28
ATG4A-201ENST00000343524 NPBWR2P48146 333 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 EFNA3P52797 238 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 RUNX1Q01196 453 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 SQSTM1Q13501 440 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 TRIM61Q5EBN2 209 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 PRR27Q6MZM9 219 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 DOK3Q7L591 496 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 TMEM144Q7Z5S9 345 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 TMEM25Q86YD3 366 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 ZNF695Q8IW36 515 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 OR5AS1Q8N127 324 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 STARD4Q96DR4 205 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 RASL10BQ96S79 203 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 ADOQ96SZ5 270 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 PARLQ9H300 379 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 ZNF703Q9H7S9 590 aaPredicted RBP7.03□□□□□ -1.28
ATG4A-201ENST00000343524 LRIT1Q9P2V4 623 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 VDAC3Q9Y277 283 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 COA3Q9Y2R0 106 aaPredicted RBP7.03□□□□□ -1.28
ATG4A-201ENST00000343524 NUMA1Q14980 2115 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 TRBV9A0A0B4J1U6 114 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 A0A0U1RQK1 487 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 C3orf85A0A1B0GTC6 90 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 ZNF320A2RRD8 509 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 DIRC3C9JPN6 131 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 EFEMP2O95967 443 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 SP9P0CG40 484 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 CTSEP14091 401 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 CCL1P22362 96 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 ASCL1P50553 236 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 CLDN18P56856 261 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 HBG1P69891 147 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 HBG2P69892 147 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 KIR2DS3Q14952 304 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 OR8B8Q15620 311 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 PMCHL1Q16048 86 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 SP6Q3SY56 376 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 FNDC7Q5VTL7 733 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 LCN15Q6UWW0 184 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 RTN4RL2Q86UN3 420 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 LSRQ86X29 649 aaPredicted RBP7.03□□□□□ -1.28
ATG4A-201ENST00000343524 COMMD2Q86X83 199 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 TMEM256Q8N2U0 113 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 C17orf78Q8N4C9 275 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 BCORP1Q8N888 145 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 MRPL30Q8TCC3 161 aaKnown RBP7.03□□□□□ -1.28
ATG4A-201ENST00000343524 CYB5D2Q8WUJ1 264 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 GPR146Q96CH1 333 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 TMEM56Q96MV1 263 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 RAB40CQ96S21 281 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 TMEM222Q9H0R3 208 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 ZDHHC11Q9H8X9 412 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 CENPMQ9NSP4 180 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 PLEKHJ1Q9NW61 149 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms