RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CLPXO76031 633 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 S100A5P33763 92 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 GNG2P59768 71 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 C17orf58Q2M2W7 97 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 METTL11BQ5VVY1 283 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 ZNF880Q6PDB4 577 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 C1orf122Q6ZSJ8 110 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 GAL3ST2Q9H3Q3 398 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 AUP1Q9Y679 476 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 KBTBD11-OT1A0A1B0GTJ5 212 aa18.2■□□□□ 0.5
SDC3-202ENST00000339394 C17orf98A8MV24 154 aa18.2■□□□□ 0.5
SDC3-202ENST00000339394 J3QLI3 93 aa18.2■□□□□ 0.5
SDC3-202ENST00000339394 MMP9P14780 707 aa18.2■□□□□ 0.5
SDC3-202ENST00000339394 SSTR5P35346 364 aa18.2■□□□□ 0.5
SDC3-202ENST00000339394 PITPNAQ00169 270 aa18.2■□□□□ 0.5
SDC3-202ENST00000339394 SETD6Q8TBK2 473 aa18.2■□□□□ 0.5
SDC3-202ENST00000339394 SIRPDQ9H106 197 aa18.2■□□□□ 0.5
SDC3-202ENST00000339394 ZNF230Q9UIE0 474 aaPredicted RBP18.2■□□□□ 0.5
SDC3-202ENST00000339394 TLN2Q9Y4G6 2542 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 ZNF729A6NN14 1252 aaPredicted RBP18.19■□□□□ 0.5
SDC3-202ENST00000339394 POM121CA8CG34 1229 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 SSX5O60225 188 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 TOX4O94842 621 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 AVPP01185 164 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 FCGR3AP08637 254 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 OMGP23515 440 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 C6orf183Q5T699 404 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 CLEC9AQ6UXN8 241 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 SNX29P2Q8IUI4 249 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 OR6Q1Q8NGQ2 317 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 GCDHQ92947 438 aaPredicted RBP18.19■□□□□ 0.5
SDC3-202ENST00000339394 ABHD1Q96SE0 405 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 PCGF1Q9BSM1 259 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 GSX1Q9H4S2 264 aaPredicted RBP18.19■□□□□ 0.5
SDC3-202ENST00000339394 METTL8Q9H825 291 aaKnown RBP18.19■□□□□ 0.5
SDC3-202ENST00000339394 YAE1D1Q9NRH1 226 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 CALYQ9NYX4 217 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 OPN4Q9UHM6 478 aa18.19■□□□□ 0.5
SDC3-202ENST00000339394 ANK3Q12955 4377 aaKnown RBP18.18■□□□□ 0.5
SDC3-202ENST00000339394 hCG_1809904A0A1W2PP81 198 aa18.18■□□□□ 0.5
SDC3-202ENST00000339394 A0A1W2PPE2 198 aa18.18■□□□□ 0.5
SDC3-202ENST00000339394 A0A1W2PR64 198 aa18.18■□□□□ 0.5
SDC3-202ENST00000339394 A0A1W2PRV1 198 aa18.18■□□□□ 0.5
SDC3-202ENST00000339394 C12orf77C9JDV5 145 aa18.18■□□□□ 0.5
SDC3-202ENST00000339394 C15orf65H3BRN8 121 aa18.18■□□□□ 0.5
SDC3-202ENST00000339394 ORC5O43913 435 aa18.18■□□□□ 0.5
SDC3-202ENST00000339394 MMP23AO75900 390 aa18.18■□□□□ 0.5
SDC3-202ENST00000339394 RFESDQ8TAC1 157 aa18.18■□□□□ 0.5
SDC3-202ENST00000339394 ARL11Q969Q4 196 aa18.18■□□□□ 0.5
SDC3-202ENST00000339394 LINC00574Q9H8X3 128 aa18.18■□□□□ 0.5
SDC3-202ENST00000339394 TAF9BQ9HBM6 251 aa18.18■□□□□ 0.5
SDC3-202ENST00000339394 Q9N2K0 584 aa18.18■□□□□ 0.5
SDC3-202ENST00000339394 A8MV72 311 aaPredicted RBP18.17■□□□□ 0.5
SDC3-202ENST00000339394 NPIPB11E5RHQ5 1161 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 TPPPO94811 219 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 RBP4P02753 201 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 DTYMKP23919 212 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 PRSS3P35030 304 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 DLX1P56177 255 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 HEPN1Q6WQI6 88 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 C1orf229Q6ZS94 237 aaPredicted RBP18.17■□□□□ 0.5
SDC3-202ENST00000339394 MOB1BQ7L9L4 216 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 VMO1Q7Z5L0 202 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 C5orf24Q7Z6I8 188 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 PRR18Q8N4B5 295 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 UBALD1Q8TB05 177 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 TBX15Q96SF7 602 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 SIRT7Q9NRC8 400 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 PTTG2Q9NZH5 202 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 KCNIP1Q9NZI2 227 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 F8P00451 2351 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 MEIOCA2RUB1 952 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 FABP12A6NFH5 140 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 PRTN3P24158 256 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 GUCA2AQ02747 115 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 PRB3Q04118 309 aaPredicted RBP18.17■□□□□ 0.5
SDC3-202ENST00000339394 TRAT1Q6PIZ9 186 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 ZNF554Q86TJ5 538 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 MAFIPQ8WZ33 124 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 SOSTQ9BQB4 213 aa18.17■□□□□ 0.5
SDC3-202ENST00000339394 UNKLQ9H9P5 680 aaKnown RBP18.17■□□□□ 0.5
SDC3-202ENST00000339394 IGHV1-8P0DP01 117 aa18.16■□□□□ 0.5
SDC3-202ENST00000339394 IL18Q14116 193 aa18.16■□□□□ 0.5
SDC3-202ENST00000339394 PRAMEF5Q5TYX0 476 aa18.16■□□□□ 0.5
SDC3-202ENST00000339394 BAIAP2L2Q6UXY1 529 aa18.16■□□□□ 0.5
SDC3-202ENST00000339394 ZNF782Q6ZMW2 699 aaPredicted RBP18.16■□□□□ 0.5
SDC3-202ENST00000339394 CCDC190Q86UF4 302 aa18.16■□□□□ 0.5
SDC3-202ENST00000339394 ST6GALNAC5Q9BVH7 336 aa18.16■□□□□ 0.5
SDC3-202ENST00000339394 MGAT4AQ9UM21 535 aa18.16■□□□□ 0.5
SDC3-202ENST00000339394 WNK2Q9Y3S1 2297 aa18.16■□□□□ 0.5
SDC3-202ENST00000339394 SPINT2O43291 252 aa18.15■□□□□ 0.5
SDC3-202ENST00000339394 HBZP02008 142 aa18.15■□□□□ 0.5
SDC3-202ENST00000339394 GDNFP39905 211 aa18.15■□□□□ 0.5
SDC3-202ENST00000339394 HMGN3Q15651 99 aa18.15■□□□□ 0.5
SDC3-202ENST00000339394 Q71RC1 249 aaPredicted RBP18.15■□□□□ 0.5
SDC3-202ENST00000339394 OR1L1Q8NH94 360 aa18.15■□□□□ 0.5
SDC3-202ENST00000339394 C15orf40Q8WUR7 153 aa18.15■□□□□ 0.5
SDC3-202ENST00000339394 TNFRSF14Q92956 283 aa18.15■□□□□ 0.5
SDC3-202ENST00000339394 UPRTQ96BW1 309 aa18.15■□□□□ 0.5
SDC3-202ENST00000339394 KIRREL1Q96J84 757 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms