RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 IL10RAQ13651 578 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 Q499Y3 187 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 C11orf87Q6NUJ2 197 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 ASCL3Q9NQ33 180 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 TMEM167BQ9NRX6 74 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 METRNQ9UJH8 293 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 DMRT1Q9Y5R6 373 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 J3KTA2 159 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 BUB3O43684 328 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 WNT11O96014 354 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 COX7A1P24310 79 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 SRIP30626 198 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 SNRPGP62308 76 aaKnown RBP6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 CYP1B1Q16678 543 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 ZNF585BQ52M93 769 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 SAXO2Q658L1 398 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 P2RX4Q99571 388 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 TMEM243Q9BU79 118 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 GPR27Q9NS67 375 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 MRC1P22897 1456 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 TMED7-TICAM2A0A0A6YYA0 188 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 NPIPB15A6NHN6 443 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 AMY1AP04745 511 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 ICAM2P13598 275 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 HOXB3P14651 431 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 IL1RNP18510 177 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 SMN1Q16637 294 aaKnown RBP6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 ANXA2RQ3ZCQ2 193 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 Q6ZSR6 202 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 ARL14EPQ8N8R7 260 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 KCTD12Q96CX2 325 aaKnown RBP6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 ABHD14BQ96IU4 210 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 HOXD1Q9GZZ0 328 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 PRDM13Q9H4Q3 707 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 ETHE1O95571 254 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 VDAC1P21796 283 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 KLRK1P26718 216 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 NBL1P41271 181 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 LGALS7P47929 136 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 FXYD3Q14802 87 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 LRRC26Q2I0M4 334 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 C10orf113Q5VZT2 155 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 KIR2DL4Q99706 377 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 MLST8Q9BVC4 326 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 POMT2Q9UKY4 750 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 DDX60Q8IY21 1712 aaKnown RBP6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 A0A0A6YYD4 124 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 GFRA2O00451 464 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 VEGFAP15692 232 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 BTG1P62324 171 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 EFNB1P98172 346 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 MORN1Q5T089 497 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 TMEM207Q6UWW9 146 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 WBP2Q969T9 261 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 GJD4Q96KN9 370 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 TMEM59LQ9UK28 342 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 TRAV25A0A0B4J276 109 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 C9JCJ5 164 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 INHBCP55103 352 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 GHRHRQ02643 423 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 KLF17Q5JT82 389 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 GUSBP11Q6P575 273 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 CLDN22Q8N7P3 220 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 TP53I13Q8NBR0 393 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 JMJD8Q96S16 334 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 SARGQ9BW04 601 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 CHST5Q9GZS9 411 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 FBXL12Q9NXK8 326 aa6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 ERRFI1Q9UJM3 462 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-201ENST00000313860 ATXN7O15265 892 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 CLPSP04118 112 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 FAM157BP0CG42 384 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 ANOS1P23352 680 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 SLC25A30Q5SVS4 291 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 KIRREL2Q6UWL6 708 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 EMCNQ9ULC0 261 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 TMEM250H0YL14 139 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 PTGIRP43119 386 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 EFNB2P52799 333 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 CEACAM16Q2WEN9 425 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 PABPC1L2AQ5JQF8 200 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 PLPPR4Q7Z2D5 763 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 WFDC8Q8IUA0 241 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 SLC16A11Q8NCK7 471 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 PPDPFLQ8WWR9 84 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 KHSRPQ92945 711 aaKnown RBP eCLIP6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 ZNF479Q96JC4 524 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 PRSS27Q9BQR3 290 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 TAAR2Q9P1P5 351 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 MON2Q7Z3U7 1717 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 LHBP01229 141 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 IGKV3-20P01619 116 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 FGF2P09038 288 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 RABIFP47224 123 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 TXNDC8Q6A555 127 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 TCF24Q7RTU0 167 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 BCDIN3DQ7Z5W3 292 aaKnown RBP6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 LHFPL5Q8TAF8 219 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 CACNG8Q8WXS5 425 aa6.74□□□□□ -1.33
LIMCH1-201ENST00000313860 IL17FQ96PD4 163 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms