RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 C11orf88Q6PI97 169 aa13.06□□□□□ -0.32
LSM1-201ENST00000311351 ZNF497Q6ZNH5 498 aa13.06□□□□□ -0.32
LSM1-201ENST00000311351 CDH26Q8IXH8 852 aa13.06□□□□□ -0.32
LSM1-201ENST00000311351 CCDC107Q8WV48 283 aa13.06□□□□□ -0.32
LSM1-201ENST00000311351 TOMM40LQ969M1 308 aa13.06□□□□□ -0.32
LSM1-201ENST00000311351 FAM46BQ96A09 425 aa13.06□□□□□ -0.32
LSM1-201ENST00000311351 SELENOIQ9C0D9 397 aa13.06□□□□□ -0.32
LSM1-201ENST00000311351 PRSS22Q9GZN4 317 aa13.06□□□□□ -0.32
LSM1-201ENST00000311351 DUSP21Q9H596 190 aa13.06□□□□□ -0.32
LSM1-201ENST00000311351 TPRKBQ9Y3C4 175 aa13.06□□□□□ -0.32
LSM1-201ENST00000311351 C15orf65H3BRN8 121 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 AIPO00170 330 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 BRS3P32247 399 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 GPR50Q13585 617 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 DIAPH2-AS1Q14236 149 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 C2orf68Q2NKX9 166 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 ARSJQ5FYB0 599 aaPredicted RBP13.05□□□□□ -0.32
LSM1-201ENST00000311351 RAB12Q6IQ22 244 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 UNQ9370/PRO34162Q6UXP9 181 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 LRRTM1Q86UE6 522 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 MS4A15Q8N5U1 240 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 CFHR4Q92496 578 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 RPEQ96AT9 228 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 CREB3L1Q96BA8 519 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 Q96M66 194 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 KCNK15Q9H427 330 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 RAB26Q9ULW5 256 aa13.05□□□□□ -0.32
LSM1-201ENST00000311351 AMMECR1Q9Y4X0 333 aaPredicted RBP13.05□□□□□ -0.32
LSM1-201ENST00000311351 IGHV3-43A0A0B4J1X8 118 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 SH2D7A6NKC9 451 aaPredicted RBP13.04□□□□□ -0.32
LSM1-201ENST00000311351 WIPF1O43516 503 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 RGS10O43665 173 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 SC5DO75845 299 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 MT-ND4P03905 459 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 HSMCR30P0CW71 290 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 IGHV3-43DP0DP04 118 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 MAP2K4P45985 399 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 ARHGDIBP52566 201 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 RPS25P62851 125 aaKnown RBP13.04□□□□□ -0.32
LSM1-201ENST00000311351 SIGIRRQ6IA17 410 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 OR10K2Q6IF99 312 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 CEACAM19Q7Z692 300 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 LYG1Q8N1E2 194 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 OR10A7Q8NGE5 316 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 OR4K15Q8NH41 348 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 FAM110DQ8TAY7 271 aaPredicted RBP13.04□□□□□ -0.32
LSM1-201ENST00000311351 UFD1Q92890 307 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 ARL11Q969Q4 196 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 TMEM203Q969S6 136 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 MRPS24Q96EL2 167 aaKnown RBP13.04□□□□□ -0.32
LSM1-201ENST00000311351 CNBD2Q96M20 576 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 UQCC2Q9BRT2 126 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 SLC25A33Q9BSK2 321 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 CCDC90BQ9GZT6 254 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 Q9H521 79 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 LIN7BQ9HAP6 207 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 SPACA1Q9HBV2 294 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 ETAA1Q9NY74 926 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 PEX16Q9Y5Y5 336 aa13.04□□□□□ -0.32
LSM1-201ENST00000311351 A0A1W2PPI3 338 aa13.03□□□□□ -0.32
LSM1-201ENST00000311351 MCRIP1C9JLW8 97 aa13.03□□□□□ -0.32
LSM1-201ENST00000311351 SDCBPO00560 298 aaPredicted RBP13.03□□□□□ -0.32
LSM1-201ENST00000311351 KCNAB3O43448 404 aa13.03□□□□□ -0.32
LSM1-201ENST00000311351 CSF1P09603 554 aa13.03□□□□□ -0.32
LSM1-201ENST00000311351 CRHBPP24387 322 aa13.03□□□□□ -0.32
LSM1-201ENST00000311351 MNDAP41218 407 aa13.03□□□□□ -0.32
LSM1-201ENST00000311351 VDAC2P45880 294 aaPredicted RBP13.03□□□□□ -0.32
LSM1-201ENST00000311351 HSD17B12Q53GQ0 312 aa13.03□□□□□ -0.32
LSM1-201ENST00000311351 CCDC144NLQ6NUI1 221 aa13.03□□□□□ -0.32
LSM1-201ENST00000311351 DTX3Q8N9I9 347 aa13.03□□□□□ -0.32
LSM1-201ENST00000311351 OR56B4Q8NH76 319 aa13.03□□□□□ -0.32
LSM1-201ENST00000311351 CAPSLQ8WWF8 208 aa13.03□□□□□ -0.32
LSM1-201ENST00000311351 BLOC1S6Q9UL45 172 aa13.03□□□□□ -0.32
LSM1-201ENST00000311351 RRP15Q9Y3B9 282 aaKnown RBP13.03□□□□□ -0.32
LSM1-201ENST00000311351 UBE2QL1A1L167 161 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 FAM90A10PA6NDY2 464 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 FAM90A18PA6NE21 464 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 FAM90A16PA6NEW6 464 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 FAM90A20PA6NIJ5 464 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 FAM90A7PA6NKC0 464 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 FAM90A12PA8MX19 464 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 FAM90A5PA8MXJ8 464 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 FAM90A23PA8MXZ1 464 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 OOSP1A8MZH6 123 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 C12orf77C9JDV5 145 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 FBXO24O75426 580 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 OR2F2O95006 317 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 MPIG6BO95866 241 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 SNRNP70P08621 437 aaKnown RBP13.02□□□□□ -0.33
LSM1-201ENST00000311351 UCHL1P09936 223 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 FAM90A15PP0C7V4 464 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 FAM90A13PP0C7W8 464 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 FAM90A14PP0C7W9 464 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 FAM90A24PP0C7X0 464 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 CD28P10747 220 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 GZMHP20718 246 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 MADCAM1Q13477 382 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 ABCA11PQ4W5N1 156 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 NKAPLQ5M9Q1 402 aa13.02□□□□□ -0.33
LSM1-201ENST00000311351 SYT6Q5T7P8 510 aaPredicted RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms