RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 DDTP30046 118 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 IER3P46695 156 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 TCL1AP56279 114 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 LRRC10Q5BKY1 277 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 LRRC29Q8WV35 223 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 AMELYQ99218 206 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 NUDT16L1Q9BRJ7 211 aaKnown RBP11.23□□□□□ -0.61
COL3A1-201ENST00000304636 PRRG2O14669 202 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 FOXS1O43638 330 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 NDUFB3O43676 98 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 RBM11P57052 281 aaKnown RBP11.23□□□□□ -0.61
COL3A1-201ENST00000304636 ANKRD55Q3KP44 614 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 BLNKQ8WV28 456 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 MISP3Q96FF7 219 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 OR6C3Q9NZP0 311 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 HELTA6NFD8 242 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 NEURL1O76050 574 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 RBP4P02753 201 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 RUNX1Q01196 453 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 HLA-BQ31612 363 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 ZNF721Q8TF20 911 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 HIST1H2BAQ96A08 127 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 MAP1LC3CQ9BXW4 147 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 P4HTMQ9NXG6 502 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 PCM1Q15154 2024 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 LOC102724200A0A096LPH7 203 aaPredicted RBP11.23□□□□□ -0.61
COL3A1-201ENST00000304636 NXPH1P58417 271 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 VWA1Q6PCB0 445 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 OR5A2Q8NGI9 324 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 MOB3AQ96BX8 217 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 ELOVL1Q9BW60 279 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 METTL1Q9UBP6 276 aaKnown RBP11.23□□□□□ -0.61
COL3A1-201ENST00000304636 A0A0B4J293 547 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 SHISA3A0PJX4 238 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 PDPNQ86YL7 162 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 OR1P1Q8NH06 330 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 ZNF519Q8TB69 540 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 LRRC3BQ96PB8 259 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 P2RX4Q99571 388 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 IL36GQ9NZH8 169 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 KCNE5Q9UJ90 142 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 SLC36A1Q7Z2H8 476 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 WFDC8Q8IUA0 241 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 D2HGDHQ8N465 521 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 TMEM38BQ9NVV0 291 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 NAGKQ9UJ70 344 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 C1QL1O75973 258 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 OR2J3O76001 311 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 TMEM222Q9H0R3 208 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 SRD5A3Q9H8P0 318 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 COL5A3P25940 1745 aaPredicted RBP11.22□□□□□ -0.61
COL3A1-201ENST00000304636 DIRC3C9JPN6 131 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 EIF3IQ13347 325 aaKnown RBP11.22□□□□□ -0.61
COL3A1-201ENST00000304636 OR1A1Q9P1Q5 309 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 CARHSP1Q9Y2V2 147 aaKnown RBP11.22□□□□□ -0.61
COL3A1-201ENST00000304636 IGLV1-36A0A0B4J1U3 117 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 J3QT63 122 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 HAND1O96004 215 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 APCSP02743 223 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 FAM157CP0CG43 387 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 HYAL1Q12794 435 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 ZXDCQ2QGD7 858 aaPredicted RBP11.22□□□□□ -0.61
COL3A1-201ENST00000304636 TEX30Q5JUR7 227 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 MRPL54Q6P161 138 aaKnown RBP11.22□□□□□ -0.61
COL3A1-201ENST00000304636 DHRS11Q6UWP2 260 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 MOB3BQ86TA1 216 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 OR2M3Q8NG83 312 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 TMEM204Q9BSN7 226 aa11.22□□□□□ -0.61
COL3A1-201ENST00000304636 MYOZ1Q9NP98 299 aaPredicted RBP11.22□□□□□ -0.61
COL3A1-201ENST00000304636 SGMS2Q8NHU3 365 aa11.21□□□□□ -0.61
COL3A1-201ENST00000304636 GAL3ST2Q9H3Q3 398 aa11.21□□□□□ -0.61
COL3A1-201ENST00000304636 DOK5Q9P104 306 aa11.21□□□□□ -0.61
COL3A1-201ENST00000304636 MCM3APO60318 1980 aa11.21□□□□□ -0.61
COL3A1-201ENST00000304636 IGHV1OR15-9A0A0B4J2B8 117 aa11.21□□□□□ -0.61
COL3A1-201ENST00000304636 H0Y980 276 aa11.21□□□□□ -0.61
COL3A1-201ENST00000304636 FAM87AP0C7U9 286 aa11.21□□□□□ -0.61
COL3A1-201ENST00000304636 DANCRP0C864 163 aa11.21□□□□□ -0.61
COL3A1-201ENST00000304636 G6PCP35575 357 aa11.21□□□□□ -0.61
COL3A1-201ENST00000304636 HFEQ30201 348 aa11.21□□□□□ -0.61
COL3A1-201ENST00000304636 ZNF766Q5HY98 468 aa11.21□□□□□ -0.61
COL3A1-201ENST00000304636 SSMEM1Q8WWF3 244 aa11.21□□□□□ -0.61
COL3A1-201ENST00000304636 C5orf66Q9H5L9 145 aa11.21□□□□□ -0.61
COL3A1-201ENST00000304636 QSER1Q2KHR3 1735 aa11.21□□□□□ -0.61
COL3A1-201ENST00000304636 NPIPB9F8W1W9 429 aa11.21□□□□□ -0.62
COL3A1-201ENST00000304636 SCGB1C2P0DMR2 95 aa11.21□□□□□ -0.62
COL3A1-201ENST00000304636 NAT2P11245 290 aa11.21□□□□□ -0.62
COL3A1-201ENST00000304636 BRS3P32247 399 aa11.21□□□□□ -0.62
COL3A1-201ENST00000304636 PPOXP50336 477 aa11.21□□□□□ -0.62
COL3A1-201ENST00000304636 B2MP61769 119 aa11.21□□□□□ -0.62
COL3A1-201ENST00000304636 FDX2Q6P4F2 183 aa11.21□□□□□ -0.62
COL3A1-201ENST00000304636 SPNS3Q6ZMD2 512 aa11.21□□□□□ -0.62
COL3A1-201ENST00000304636 DNPH1O43598 174 aa11.21□□□□□ -0.62
COL3A1-201ENST00000304636 KLK2P20151 261 aa11.21□□□□□ -0.62
COL3A1-201ENST00000304636 SSPNQ14714 243 aa11.21□□□□□ -0.62
COL3A1-201ENST00000304636 OR1K1Q8NGR3 316 aa11.21□□□□□ -0.62
COL3A1-201ENST00000304636 A0A1W2PR80 420 aa11.2□□□□□ -0.62
COL3A1-201ENST00000304636 SPINT1O43278 529 aa11.2□□□□□ -0.62
COL3A1-201ENST00000304636 TNFSF15O95150 251 aa11.2□□□□□ -0.62
COL3A1-201ENST00000304636 MDKP21741 143 aaPredicted RBP11.2□□□□□ -0.62
COL3A1-201ENST00000304636 WDR74Q6RFH5 385 aaPredicted RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms