RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 KCNMB1Q16558 191 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 PARM1Q6UWI2 310 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 LSRQ86X29 649 aaPredicted RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 MOB3AQ96BX8 217 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 MRGPRX1Q96LB2 322 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 SLC25A22Q9H936 323 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 C20orf141Q9NUB4 165 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 FBXO4Q9UKT5 387 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 KIR2DS1A0A191URI9 304 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 H0YGG7 62 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 GALR2O43603 387 aaPredicted RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 HCRTR1O43613 425 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 RBP4P02753 201 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 IGFBP3P17936 291 aaPredicted RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 KIR2DS4P43632 304 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 KIR2DS1Q14954 304 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 UBE2V2Q15819 145 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 TMEM176BQ3YBM2 270 aaPredicted RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 ZNF260Q3ZCT1 412 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 KHDC3LQ587J8 217 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 LILRA3Q8N6C8 439 aaPredicted RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 LINC01555Q8NAE3 123 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 DNASE2BQ8WZ79 361 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 HDHD3Q9BSH5 251 aaPredicted RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 RSPO3Q9BXY4 272 aaPredicted RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 CALHM2Q9HA72 323 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 WNT6Q9Y6F9 365 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 IGHV3-64DA0A0J9YX35 117 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 LILRA5A6NI73 299 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 MDH2P40926 338 aaKnown RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 PPP1R1AQ13522 171 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 LY6G6FQ5SQ64 297 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 TMEM190Q8WZ59 177 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 RGP1Q92546 391 aaPredicted RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 RBKSQ9H477 322 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 TINAGQ9UJW2 476 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 TMEM272A0A1B0GTI8 110 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 PRR19A6NJB7 356 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 C1QTNF9BB2RNN3 333 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 ST8SIA5O15466 376 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 TBX6O95947 436 aaPredicted RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 UCP2P55851 309 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 PAFAH1B2P68402 229 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 CISD2Q8N5K1 135 aaKnown RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 MRPL43Q8N983 215 aaKnown RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 OR10X1Q8NGY0 326 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 OR1P1Q8NH06 330 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 DECR2Q9NUI1 292 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 COL4A6Q14031 1691 aa5.65□□□□□ -1.5
VPS35-201ENST00000299138 NYNRINQ9P2P1 1898 aaKnown RBP5.65□□□□□ -1.5
VPS35-201ENST00000299138 A0A1W2PR80 420 aa5.65□□□□□ -1.5
VPS35-201ENST00000299138 LDB3O75112 727 aa5.65□□□□□ -1.5
VPS35-201ENST00000299138 DXOO77932 396 aaKnown RBP5.65□□□□□ -1.5
VPS35-201ENST00000299138 IGHG1P01857 330 aa5.65□□□□□ -1.5
VPS35-201ENST00000299138 CEACAM5P06731 702 aa5.65□□□□□ -1.5
VPS35-201ENST00000299138 RPL18Q07020 188 aaKnown RBP5.65□□□□□ -1.5
VPS35-201ENST00000299138 WDR38Q5JTN6 314 aa5.65□□□□□ -1.5
VPS35-201ENST00000299138 OR11L1Q8NGX0 322 aa5.65□□□□□ -1.5
VPS35-201ENST00000299138 ANGPTL4Q9BY76 406 aa5.65□□□□□ -1.5
VPS35-201ENST00000299138 PBOV1Q9GZY1 135 aa5.65□□□□□ -1.5
VPS35-201ENST00000299138 SEBOXQ9HB31 216 aaPredicted RBP5.65□□□□□ -1.5
VPS35-201ENST00000299138 FGF17O60258 216 aa5.65□□□□□ -1.5
VPS35-201ENST00000299138 GOSR1O95249 250 aa5.65□□□□□ -1.5
VPS35-201ENST00000299138 ZXDAP98168 799 aa5.65□□□□□ -1.5
VPS35-201ENST00000299138 FER1L6-AS2Q96M78 137 aa5.65□□□□□ -1.5
VPS35-201ENST00000299138 DNAJC4Q9NNZ3 241 aa5.65□□□□□ -1.5
VPS35-201ENST00000299138 MRPL16Q9NX20 251 aaKnown RBP5.65□□□□□ -1.5
VPS35-201ENST00000299138 A0A1W2PQU0 124 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 C7orf77A4D0Y5 90 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 OPRM1P35372 400 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 RPL30P62888 115 aaKnown RBP5.65□□□□□ -1.51
VPS35-201ENST00000299138 C1orf140Q5VVS0 124 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 LRRC75AQ8NAA5 344 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 BHLHE23Q8NDY6 225 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 MAFAQ8NHW3 353 aaPredicted RBP5.65□□□□□ -1.51
VPS35-201ENST00000299138 FLYWCH2Q96CP2 140 aaKnown RBP5.65□□□□□ -1.51
VPS35-201ENST00000299138 AURKAIP1Q9NWT8 199 aaPredicted RBP5.65□□□□□ -1.51
VPS35-201ENST00000299138 KCNE3Q9Y6H6 103 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 POLR2AP24928 1970 aaKnown RBP5.65□□□□□ -1.51
VPS35-201ENST00000299138 PRSS38A1L453 326 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 KCNAB3O43448 404 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 F12P00748 615 aaPredicted RBP5.65□□□□□ -1.51
VPS35-201ENST00000299138 NDUFB7P17568 137 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 CCR5P51681 352 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 H1FNTQ75WM6 255 aaPredicted RBP5.65□□□□□ -1.51
VPS35-201ENST00000299138 MRGPRX4Q96LA9 322 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 HCFC1R1Q9NWW0 138 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 TAS2R4Q9NYW5 299 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 PEF1Q9UBV8 284 aaKnown RBP5.65□□□□□ -1.51
VPS35-201ENST00000299138 MTCH2Q9Y6C9 303 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 FAM74A7A6NL05 159 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 EIF3GO75821 320 aaKnown RBP eCLIP5.65□□□□□ -1.51
VPS35-201ENST00000299138 NTSR1P30989 418 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 KLF3P57682 345 aaPredicted RBP5.65□□□□□ -1.51
VPS35-201ENST00000299138 PRSS53Q2L4Q9 553 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 S100A7L2Q5SY68 101 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 OR10G8Q8NGN5 311 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 SPPL3Q8TCT6 385 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 VOPP1Q96AW1 172 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 TMEM208Q9BTX3 173 aa5.65□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms