RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 FAM131CQ96AQ9 280 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 TMEM222Q9H0R3 208 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 ZNF286AQ9HBT8 521 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 NBEAQ8NFP9 2946 aa11.61□□□□□ -0.55
SKA3-201ENST00000298260 NCOR1O75376 2440 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 A0A1W2PNV4 684 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 PPYP01298 95 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 ZNF295-AS1Q8N0V1 137 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 C11orf42Q8N5U0 333 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 OR5B12Q96R08 314 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 CLEC1BQ9P126 229 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 IGKV1D-13A0A0B4J2D9 117 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 IGHV5-51A0A0C4DH38 117 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 IGKV1-12A0A0C4DH73 117 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 ZNF737O75373 536 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 IGKV1D-12P01611 117 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 IGKV1-13P0DP09 117 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 HNRNPA2B1P22626 353 aaKnown RBP11.6□□□□□ -0.55
SKA3-201ENST00000298260 TMEM241Q24JQ0 296 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 TDHQ8IZJ6 230 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 GAPTQ8N292 157 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 SNIP1Q8TAD8 396 aaKnown RBP11.6□□□□□ -0.55
SKA3-201ENST00000298260 MOB3AQ96BX8 217 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 RASL10BQ96S79 203 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 RBM24Q9BX46 236 aaKnown RBP11.6□□□□□ -0.55
SKA3-201ENST00000298260 FOXJ2Q9P0K8 574 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 KLHL13Q9P2N7 655 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 V9GYS6 101 aa11.6□□□□□ -0.55
SKA3-201ENST00000298260 PGPEP1LA6NFU8 196 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 TMEM150CB9EJG8 249 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 CNN1P51911 297 aaKnown RBP11.59□□□□□ -0.55
SKA3-201ENST00000298260 RPS16P62249 146 aaKnown RBP11.59□□□□□ -0.55
SKA3-201ENST00000298260 ENDOGQ14249 297 aaKnown RBP11.59□□□□□ -0.55
SKA3-201ENST00000298260 RSPO1Q2MKA7 263 aaPredicted RBP11.59□□□□□ -0.55
SKA3-201ENST00000298260 ACTL10Q5JWF8 245 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 TMPRSS7Q7RTY8 843 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 H1FOOQ8IZA3 346 aaPredicted RBP11.59□□□□□ -0.55
SKA3-201ENST00000298260 ARL6IP6Q8N6S5 226 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 OR2J1Q9GZK6 312 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 THADAQ6YHU6 1953 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 LIPT2A6NK58 231 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 IGKV1D-33P01593 117 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 IGKV1-33P01594 117 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 PDLIM4P50479 330 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 FAM78BQ5VT40 261 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 PYGO2Q9BRQ0 406 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 ASCL3Q9NQ33 180 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 TAAR3PQ9P1P4 343 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 A0A0U1RQK1 487 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 MAP1LC3B2A6NCE7 125 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 CDS2O95674 445 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 CCL1P22362 96 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 FAM189A2Q15884 450 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 VN1R17PQ8TDU5 208 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 NEK7Q8TDX7 302 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 MAP1LC3BQ9GZQ8 125 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 PARLQ9H300 379 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 NAT8Q9UHE5 227 aa11.59□□□□□ -0.55
SKA3-201ENST00000298260 C1QTNF9BB2RNN3 333 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 DHRS3O75911 302 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 IFNA5P01569 189 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 KIR2DL1P43626 348 aaPredicted RBP11.58□□□□□ -0.56
SKA3-201ENST00000298260 MMDQ15546 238 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 THEM4Q5T1C6 240 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 OR2T10Q8NGZ9 312 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 ZNF442Q9H7R0 627 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 MOB1AQ9H8S9 216 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 SLC25A22Q9H936 323 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 CCL28Q9NRJ3 127 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 OR6C3Q9NZP0 311 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 ST3GAL6Q9Y274 331 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 A0A1W2PQF6 199 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 IGHG1P01857 330 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 CD82P27701 267 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 ZNF41P51814 821 aaPredicted RBP11.58□□□□□ -0.56
SKA3-201ENST00000298260 PHYHD1Q5SRE7 291 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 Q6ZWC4 215 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 OR10G4Q8NGN3 311 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 OR51H1Q8NH63 302 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 OR2V1Q8NHB1 315 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 LHX4Q969G2 390 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 ACY3Q96HD9 319 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 ZNF385AQ96PM9 386 aaKnown RBP11.58□□□□□ -0.56
SKA3-201ENST00000298260 IMMP2LQ96T52 175 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 OR51I2Q9H344 312 aa11.58□□□□□ -0.56
SKA3-201ENST00000298260 HRASP01112 189 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 LTBRP36941 435 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 ZNF133P52736 654 aaPredicted RBP11.57□□□□□ -0.56
SKA3-201ENST00000298260 ID3Q02535 119 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 DPPA3Q6W0C5 159 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 Q6ZRM9 215 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 OR4F5Q8NH21 305 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 ZNF837Q96EG3 531 aaPredicted RBP11.57□□□□□ -0.56
SKA3-201ENST00000298260 OR4F4Q96R69 305 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 ANGPTL4Q9BY76 406 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 CTDSP1Q9GZU7 261 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 RNF115Q9Y4L5 304 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 RNF114Q9Y508 228 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 ZNF320A2RRD8 509 aa11.57□□□□□ -0.56
SKA3-201ENST00000298260 F2Z2F3 143 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms