RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 FSTP19883 344 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 SPEM2Q0P670 501 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 LY6G6FQ5SQ64 297 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 SLC24A4Q8NFF2 622 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 WFIKKN1Q96NZ8 548 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 TWSG1Q9GZX9 223 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 TNFSF15O95150 251 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 RPLP1P05386 114 aaKnown RBP13.41□□□□□ -0.26
SHH-201ENST00000297261 EFNB1P98172 346 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 PIGYQ3MUY2 71 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 FOXB1Q99853 325 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 GPR27Q9NS67 375 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 LOC102724200A0A096LPH7 203 aaPredicted RBP13.41□□□□□ -0.26
SHH-201ENST00000297261 VSTM5A8MXK1 200 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 RPS4Y1P22090 263 aaKnown RBP13.41□□□□□ -0.26
SHH-201ENST00000297261 AARDQ4LEZ3 155 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 SPATA46Q5T0L3 261 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 APH1AQ96BI3 265 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 LYRM2Q9NU23 88 aaPredicted RBP13.41□□□□□ -0.26
SHH-201ENST00000297261 PCP4P48539 62 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 PLGLAQ15195 96 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 RSG1Q9BU20 258 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 CBLN4Q9NTU7 201 aa13.41□□□□□ -0.26
SHH-201ENST00000297261 TRAF3IP2O43734 574 aaPredicted RBP13.4□□□□□ -0.26
SHH-201ENST00000297261 ZNF708P17019 499 aa13.4□□□□□ -0.26
SHH-201ENST00000297261 CDC34P49427 236 aaPredicted RBP13.4□□□□□ -0.26
SHH-201ENST00000297261 UBE2G1P62253 170 aa13.4□□□□□ -0.26
SHH-201ENST00000297261 IGLV3-21P80748 117 aaPredicted RBP13.4□□□□□ -0.26
SHH-201ENST00000297261 ROM1Q03395 351 aa13.4□□□□□ -0.26
SHH-201ENST00000297261 MRGPRGQ86SM5 289 aa13.4□□□□□ -0.26
SHH-201ENST00000297261 GPX7Q96SL4 187 aaPredicted RBP13.4□□□□□ -0.26
SHH-201ENST00000297261 SMDT1Q9H4I9 107 aa13.4□□□□□ -0.26
SHH-201ENST00000297261 FREM3P0C091 2139 aa13.4□□□□□ -0.26
SHH-201ENST00000297261 REC114Q7Z4M0 266 aa13.4□□□□□ -0.26
SHH-201ENST00000297261 MRPL30Q8TCC3 161 aaKnown RBP13.4□□□□□ -0.26
SHH-201ENST00000297261 GPHA2Q96T91 129 aa13.4□□□□□ -0.26
SHH-201ENST00000297261 P4HTMQ9NXG6 502 aa13.4□□□□□ -0.26
SHH-201ENST00000297261 SLC2A8Q9NY64 477 aa13.4□□□□□ -0.26
SHH-201ENST00000297261 GPR179Q6PRD1 2367 aa13.4□□□□□ -0.26
SHH-201ENST00000297261 PAGE4O60829 102 aa13.4□□□□□ -0.26
SHH-201ENST00000297261 NOL4LQ96MY1 436 aaPredicted RBP13.4□□□□□ -0.26
SHH-201ENST00000297261 RASL10BQ96S79 203 aa13.4□□□□□ -0.26
SHH-201ENST00000297261 SLC7A10Q9NS82 523 aa13.4□□□□□ -0.26
SHH-201ENST00000297261 SH2D1BO14796 132 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 CASP6P55212 293 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 TCTEX1D1Q8N7M0 179 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 OR1K1Q8NGR3 316 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 RFESDQ8TAC1 157 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 FER1L6-AS2Q96M78 137 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 STARD10Q9Y365 291 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 EP300Q09472 2414 aaPredicted RBP13.39□□□□□ -0.27
SHH-201ENST00000297261 C2orf16Q68DN1 1984 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 ZNF253O75346 499 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 TIAF1O95411 115 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 C16orf82Q7Z2V1 217 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 RTL8AQ9BWD3 113 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 RAB9BQ9NP90 201 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 POLDIP2Q9Y2S7 368 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 A0A1W2PQD3 144 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 FAM166BA8MTA8 275 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 C11orf94C9JXX5 98 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 CRYAAP02489 173 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 BCL2P10415 239 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 OR10J1P30954 320 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 GPR12P47775 334 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 TCL1AP56279 114 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 CXorf66Q5JRM2 361 aaPredicted RBP13.39□□□□□ -0.27
SHH-201ENST00000297261 ATG101Q9BSB4 218 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 DDA1Q9BW61 102 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 M0QZK8 103 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 GGCTO75223 188 aaKnown RBP13.39□□□□□ -0.27
SHH-201ENST00000297261 IFI6P09912 130 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 IL11P20809 199 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 ZPBPQ9BS86 351 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 PCGF1Q9BSM1 259 aa13.39□□□□□ -0.27
SHH-201ENST00000297261 SCN8AQ9UQD0 1980 aa13.38□□□□□ -0.27
SHH-201ENST00000297261 DANCRP0C864 163 aa13.38□□□□□ -0.27
SHH-201ENST00000297261 CD46P15529 392 aa13.38□□□□□ -0.27
SHH-201ENST00000297261 OR2Y1Q8NGV0 311 aa13.38□□□□□ -0.27
SHH-201ENST00000297261 OIT3Q8WWZ8 545 aa13.38□□□□□ -0.27
SHH-201ENST00000297261 STARD4Q96DR4 205 aa13.38□□□□□ -0.27
SHH-201ENST00000297261 BET1LQ9NYM9 111 aa13.38□□□□□ -0.27
SHH-201ENST00000297261 ROS1P08922 2347 aa13.38□□□□□ -0.27
SHH-201ENST00000297261 TRAV39A0A0B4J263 110 aa13.38□□□□□ -0.27
SHH-201ENST00000297261 MT-CO3P00414 261 aa13.38□□□□□ -0.27
SHH-201ENST00000297261 HLA-GP17693 338 aa13.38□□□□□ -0.27
SHH-201ENST00000297261 MDH2P40926 338 aaKnown RBP13.38□□□□□ -0.27
SHH-201ENST00000297261 GUCD1Q96NT3 240 aa13.38□□□□□ -0.27
SHH-201ENST00000297261 LIPT2A6NK58 231 aa13.38□□□□□ -0.27
SHH-201ENST00000297261 CYB5R3P00387 301 aaPredicted RBP13.38□□□□□ -0.27
SHH-201ENST00000297261 CEACAM6P40199 344 aa13.38□□□□□ -0.27
SHH-201ENST00000297261 OR5AU1Q8NGC0 362 aa13.38□□□□□ -0.27
SHH-201ENST00000297261 SLC31A2O15432 143 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 GYPAP02724 150 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 CCL2P13500 99 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 PAX5Q02548 391 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 RAB35Q15286 201 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 ACSM6Q6P461 480 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 CHRNA10Q9GZZ6 450 aa13.37□□□□□ -0.27
SHH-201ENST00000297261 MPDZO75970 2070 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms