RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 LEPROTL1O95214 131 aa10.41□□□□□ -0.74
SHROOM3-201ENST00000296043 MEF2BQ02080 365 aaPredicted RBP10.41□□□□□ -0.74
SHROOM3-201ENST00000296043 FXYD3Q14802 87 aa10.41□□□□□ -0.74
SHROOM3-201ENST00000296043 RAE1P78406 368 aaKnown RBP10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 CACFD1Q9UGQ2 172 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 C1QTNF9BB2RNN3 333 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 SLC25A1P53007 311 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 JMJD6Q6NYC1 403 aaPredicted RBP10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 LYRM4Q9HD34 91 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 MED13Q9UHV7 2174 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 M0R296 226 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 ALOX12BO75342 701 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 TMEM50BP56557 158 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 WDR31Q8NA23 367 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 PTX4Q96A99 478 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 GTSF1LQ9H1H1 148 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 EDARADDQ8WWZ3 215 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 MARVELD3Q96A59 401 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 JOSD1Q15040 202 aaPredicted RBP10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 MICBQ29980 383 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 BEND2Q8NDZ0 799 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 CPEB3Q8NE35 698 aaKnown RBP10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 IGHV4-34P06331 123 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 FUT6P51993 359 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 MSRB3Q8IXL7 192 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 PSMG3Q9BT73 122 aaPredicted RBP10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 C11orf68Q9H3H3 251 aaKnown RBP10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 TRAV8-2A0A0B4J237 113 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 H3BUT2 72 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 ACP1P24666 158 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 ZFAND6Q6FIF0 208 aa10.4□□□□□ -0.74
SHROOM3-201ENST00000296043 BTG2P78543 158 aa10.4□□□□□ -0.75
SHROOM3-201ENST00000296043 IGHV3-43A0A0B4J1X8 118 aa10.4□□□□□ -0.75
SHROOM3-201ENST00000296043 DPRXA6NFQ7 191 aa10.4□□□□□ -0.75
SHROOM3-201ENST00000296043 IGHV3-43DP0DP04 118 aa10.4□□□□□ -0.75
SHROOM3-201ENST00000296043 TPTE2P1Q5T6R2 138 aa10.4□□□□□ -0.75
SHROOM3-201ENST00000296043 GOSR1O95249 250 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 NHLRC3Q5JS37 347 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 NBASA2RRP1 2371 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 MARCH11A6NNE9 402 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 NTHL1P78549 312 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 TLCD2A6NGC4 264 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 FMODQ06828 376 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 ANKRD37Q7Z713 158 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 GPR27Q9NS67 375 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 GCM2O75603 506 aaPredicted RBP10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 MT-ND6P03923 174 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 POU2F2P09086 479 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 EIF3IQ13347 325 aaKnown RBP10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 ZNF260Q3ZCT1 412 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 OR10D3Q8NH80 312 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 ZG16BQ96DA0 208 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 EGLN1Q9GZT9 426 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 TSPAN2O60636 221 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 TXNRD2Q9NNW7 524 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 TNFSF11O14788 317 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 HLA-DQA1P01909 254 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 WNT5AP41221 380 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 PWWP2BQ6NUJ5 590 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 OR8B2Q96RD0 313 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 HCFC1R1Q9NWW0 138 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 INSL6Q9Y581 213 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 AUP1Q9Y679 476 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 NTN1O95631 604 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 SNRNP40Q96DI7 357 aaKnown RBP10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 PIAS3Q9Y6X2 628 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 CDKN2AP42771 156 aaKnown RBP10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 Q5BKY6 102 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 MRGPRFQ96AM1 343 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 C4orf45Q96LM5 186 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 SEBOXQ9HB31 216 aaPredicted RBP10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 C7orf66A4D0T2 115 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 FGF17O60258 216 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 PRSS2P07478 247 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 RBPMS2Q6ZRY4 209 aaKnown RBP10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 MOB3BQ86TA1 216 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 H1FOOQ8IZA3 346 aaPredicted RBP10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 STXBP6Q8NFX7 210 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 RBPJLQ9UBG7 517 aa10.39□□□□□ -0.75
SHROOM3-201ENST00000296043 MS4A18H0YCH9 400 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 HOXD9P28356 352 aaPredicted RBP10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 MS4A18Q3C1V0 323 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 DLK2Q6UY11 383 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 RABEPKQ7Z6M1 372 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 SGK494Q96LW2 274 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 KIR2DS5A0A0G2JLQ3 304 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 A0A0G2JNG1 304 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 KIR2DS3K7RE56 304 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 APOMO95445 188 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 KIR2DS5Q14953 304 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 GAPTQ8N292 157 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 TJP1Q07157 1748 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 SYNGR2O43760 224 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 KIRREL2Q6UWL6 708 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 OR5R1Q8NH85 324 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 EIF4E2O60573 245 aaKnown RBP10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 CLDN15P56746 228 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 KRTCAP3Q53RY4 240 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 APCDD1LQ8NCL9 501 aa10.38□□□□□ -0.75
SHROOM3-201ENST00000296043 SSBP4Q9BWG4 385 aaPredicted RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms