RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 SIGIRRQ6IA17 410 aa11.54□□□□□ -0.56
HMGN3-201ENST00000275036 C11orf88Q6PI97 169 aa11.54□□□□□ -0.56
HMGN3-201ENST00000275036 IZUMO2Q6UXV1 221 aa11.54□□□□□ -0.56
HMGN3-201ENST00000275036 ZNF497Q6ZNH5 498 aa11.54□□□□□ -0.56
HMGN3-201ENST00000275036 C1QL4Q86Z23 238 aa11.54□□□□□ -0.56
HMGN3-201ENST00000275036 LYG1Q8N1E2 194 aa11.54□□□□□ -0.56
HMGN3-201ENST00000275036 NKAIN3Q8N8D7 197 aa11.54□□□□□ -0.56
HMGN3-201ENST00000275036 CCDC107Q8WV48 283 aa11.54□□□□□ -0.56
HMGN3-201ENST00000275036 Q96M66 194 aa11.54□□□□□ -0.56
HMGN3-201ENST00000275036 PCDHB16Q9NRJ7 776 aa11.54□□□□□ -0.56
HMGN3-201ENST00000275036 NOTCH3Q9UM47 2321 aa11.54□□□□□ -0.56
HMGN3-201ENST00000275036 A0A1W2PPE3 182 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 MT-ND4P03905 459 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 CSF1P09603 554 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 CRHBPP24387 322 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 LIPKQ5VXJ0 399 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 Q6ZTK2 550 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 MS4A15Q8N5U1 240 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 OR10A7Q8NGE5 316 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 NEK7Q8TDX7 302 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 THRSPQ92748 146 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 FAM46BQ96A09 425 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 CREB3L1Q96BA8 519 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 MRPS24Q96EL2 167 aaKnown RBP11.53□□□□□ -0.56
HMGN3-201ENST00000275036 UQCC2Q9BRT2 126 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 SELENOIQ9C0D9 397 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 PRSS22Q9GZN4 317 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 WNT10AQ9GZT5 417 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 TPRKBQ9Y3C4 175 aa11.53□□□□□ -0.56
HMGN3-201ENST00000275036 A0A1W2PPI3 338 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 AIPO00170 330 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 RGS10O43665 173 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 CRTAPO75718 401 aaPredicted RBP11.52□□□□□ -0.57
HMGN3-201ENST00000275036 AMY1AP04745 511 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 AMY2AP04746 511 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 CD28P10747 220 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 GZMHP20718 246 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 BRS3P32247 399 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 CEACAM3P40198 252 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 LOXL3P58215 753 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 GPR50Q13585 617 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 RBM48Q5RL73 367 aaKnown RBP11.52□□□□□ -0.57
HMGN3-201ENST00000275036 RAB12Q6IQ22 244 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 TMEM91Q6ZNR0 172 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 CEACAM19Q7Z692 300 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 GAPTQ8N292 157 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 ARL11Q969Q4 196 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 TMEM203Q969S6 136 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 OCSTAMPQ9BR26 566 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 SLC25A33Q9BSK2 321 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 KCNK15Q9H427 330 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 LIN7BQ9HAP6 207 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 PEX16Q9Y5Y5 336 aa11.52□□□□□ -0.57
HMGN3-201ENST00000275036 DNAH3Q8TD57 4116 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 IGHV3-43A0A0B4J1X8 118 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 FAM90A10PA6NDY2 464 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 FAM90A18PA6NE21 464 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 FAM90A16PA6NEW6 464 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 FAM90A20PA6NIJ5 464 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 FAM90A7PA6NKC0 464 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 SH2D7A6NKC9 451 aaPredicted RBP11.51□□□□□ -0.57
HMGN3-201ENST00000275036 FAM90A9PA6NNJ1 464 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 ADARB2-AS1A8MUL3 147 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 FAM90A12PA8MX19 464 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 FAM90A5PA8MXJ8 464 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 FAM90A23PA8MXZ1 464 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 OOSP1A8MZH6 123 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 C12orf77C9JDV5 145 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 MCRIP1C9JLW8 97 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 UCHL1P09936 223 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 FAM90A15PP0C7V4 464 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 FAM90A13PP0C7W8 464 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 FAM90A14PP0C7W9 464 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 FAM90A24PP0C7X0 464 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 IGHV3-43DP0DP04 118 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 VSIG8P0DPA2 414 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 CD37P11049 281 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 SRMP19623 302 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 MAP2K4P45985 399 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 RPS25P62851 125 aaKnown RBP11.51□□□□□ -0.57
HMGN3-201ENST00000275036 TPBGQ13641 420 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 C1orf100Q5SVJ3 147 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 SYT6Q5T7P8 510 aaPredicted RBP11.51□□□□□ -0.57
HMGN3-201ENST00000275036 OR10K2Q6IF99 312 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 SLC16A12Q6ZSM3 486 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 C16orf82Q7Z2V1 217 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 C5orf24Q7Z6I8 188 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 OR4K15Q8NH41 348 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 PHYHIPQ92561 330 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 UFD1Q92890 307 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 TOMM40LQ969M1 308 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 RPEQ96AT9 228 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 RBM14Q96PK6 669 aaKnown RBP11.51□□□□□ -0.57
HMGN3-201ENST00000275036 GFI1Q99684 422 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 VCX3BQ9H321 246 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 SPACA1Q9HBV2 294 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 ETAA1Q9NY74 926 aa11.51□□□□□ -0.57
HMGN3-201ENST00000275036 AMMECR1Q9Y4X0 333 aaPredicted RBP11.51□□□□□ -0.57
HMGN3-201ENST00000275036 UBE2QL1A1L167 161 aa11.5□□□□□ -0.57
HMGN3-201ENST00000275036 ORC5O43913 435 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms