RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 TCF23Q7RTU1 214 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 ELSPBP1Q96BH3 223 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 BEX4Q9NWD9 120 aaPredicted RBP12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 TSPAN32Q96QS1 320 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 FZR1Q9UM11 496 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 H3BQ15 152 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 TRGC1P0CF51 173 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 ABHD14BQ96IU4 210 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 NRIP2Q9BQI9 281 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 OR5AC2Q9NZP5 309 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 CTAG2O75638 210 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 PYCR3Q53H96 274 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 P2RX4Q99571 388 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 TEX30Q5JUR7 227 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 SSMEM1Q8WWF3 244 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 OPN4Q9UHM6 478 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 ABCA1O95477 2261 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 PLPP2O43688 288 aa12.33□□□□□ -0.43
CCDC88A-201ENST00000263630 TMEM250H0YL14 139 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 KLK10O43240 276 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 EMDP50402 254 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 ZNF384Q8TF68 577 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 RAX2Q96IS3 184 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 AICDAQ9GZX7 198 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 THAP10Q9P2Z0 257 aaPredicted RBP12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 TGIF2-C20orf24A0A0A6YYL0 155 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 MOSPD3O75425 235 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 GJB3O75712 270 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 SH3BGRL3Q9H299 93 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 TRAV39A0A0B4J263 110 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 CAPZBP47756 277 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 SERF2P84101 59 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 OR10D3Q8NH80 312 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 ALG14Q96F25 216 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 AKIP1Q9NQ31 210 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 SHPRHQ149N8 1683 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 FGF5P12034 268 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 GZMHP20718 246 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 C2orf83Q53S99 150 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 OR2K2Q8NGT1 345 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 MRGPRX1Q96LB2 322 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 FAM90A27PA6NNH2 459 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 SMIM18P0DKX4 95 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 MMP9P14780 707 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 OR5A1Q8NGJ0 315 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 ANKRD36A6QL64 1941 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 DNAJC25-GNG10A0A024R161 153 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 H3BRM9 83 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 MT-CO3P00414 261 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 ANKRD33Q7Z3H0 272 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 RFESDQ8TAC1 157 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 ZNF418Q8TF45 676 aaPredicted RBP12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 RBKSQ9H477 322 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 KCNE5Q9UJ90 142 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 HSPB9Q9BQS6 159 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 TXNDC17Q9BRA2 123 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 DPH3P1Q9H4G8 78 aa12.33□□□□□ -0.44
CCDC88A-201ENST00000263630 PSG9Q00887 426 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 CGB2Q6NT52 195 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 SGMS2Q8NHU3 365 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 ZNF324BQ6AW86 544 aaPredicted RBP12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 C8orf44Q96CB5 159 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 SCNM1Q9BWG6 230 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 PCP4P48539 62 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 ECSCRQ19T08 205 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 CLEC18BQ6UXF7 455 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 IGKV6-21A0A0C4DH24 114 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 CHST1O43916 411 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 SRSF5Q13243 272 aaKnown RBP12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 GPR27Q9NS67 375 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 TBC1D29Q9UFV1 150 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 ZNF107Q9UII5 783 aaPredicted RBP12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 SCN5AQ14524 2016 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 PITX3O75364 302 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 AMY1AP04745 511 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 H1FOOQ8IZA3 346 aaPredicted RBP12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 PTPRZ1P23471 2315 aaPredicted RBP12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 FGF17O60258 216 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 FMODQ06828 376 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 HSPB7Q9UBY9 170 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 HYPMO75409 117 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 TMEM95Q3KNT9 176 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 FAM71F2Q6NXP2 309 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 PKIBQ9C010 78 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 GABRG2P18507 467 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 MORN1Q5T089 497 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 IBA57Q5T440 356 aaKnown RBP12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 TOX2Q96NM4 488 aa12.32□□□□□ -0.44
CCDC88A-201ENST00000263630 TRBV9A0A0B4J1U6 114 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 IL11RAQ14626 422 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 TMSB15BA0A087X1C1 80 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 POLR2GP62487 172 aaKnown RBP eCLIP12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 B4GALNT1Q00973 533 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 TRBV23-1A0A0A0MS06 115 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 SKP2Q13309 424 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 ISOC2Q96AB3 205 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 IGHV3-43A0A0B4J1X8 118 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 IGHV3-43DP0DP04 118 aa12.31□□□□□ -0.44
CCDC88A-201ENST00000263630 KIR3DL3Q8N743 410 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms