RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TRAPPC6AO75865 159 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 BHLHE23Q8NDY6 225 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 OR10G3Q8NGC4 313 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 APOOQ9BUR5 198 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 KIAA1551Q9HCM1 1747 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 A0A1W2PQU0 124 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 B4DGG1 531 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 PEX11BO96011 259 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 IL4P05112 153 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 METAP1P53582 386 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 DNAJB12Q9NXW2 375 aaKnown RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 RARRES3Q9UL19 164 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 A0A0U1RQV5 110 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 A0A1W2PPC1 479 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 HHEXQ03014 270 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 TEPPQ6URK8 271 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 ANKRD37Q7Z713 158 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 OR4F17Q8NGA8 305 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 CACNG5Q9UF02 275 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 SMPXQ9UHP9 88 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 PRAMEF26H0Y7S4 382 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 PMP22Q01453 160 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 PRTGQ2VWP7 1150 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 TIMM23BQ5SRD1 257 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 KIRREL2Q6UWL6 708 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 BOD1L2Q8IYS8 172 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 TEX29Q8N6K0 151 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 TMEM252Q8N6L7 170 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF48Q96MX3 618 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 INSM2Q96T92 566 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 CHRNA10Q9GZZ6 450 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 DHCR7Q9UBM7 475 aaKnown RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 LRRC30A6NM36 301 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 LSM11P83369 360 aaKnown RBP eCLIP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 FOXK1P85037 733 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 C1orf174Q8IYL3 243 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 OR4D9Q8NGE8 314 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 OR13G1Q8NGZ3 307 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 KLK6Q92876 244 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 TAAR3PQ9P1P4 343 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 SLX4Q8IY92 1834 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 FFAR1O14842 300 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 NGFRP08138 427 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 ZFP36L2P47974 494 aaKnown RBP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 RND2P52198 227 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 TBC1D28Q2M2D7 210 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 LDLRAD2Q5SZI1 272 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 MRPL32Q9BYC8 188 aaKnown RBP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 MSL2Q9HCI7 577 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 BOKQ9UMX3 212 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 ODAMA1E959 279 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 CLDN18P56856 261 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 PMVKQ15126 192 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 HMGN2P46Q86SG4 172 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 BCORP1Q8N888 145 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 GPR62Q9BZJ7 368 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 SLC25A22Q9H936 323 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 FAM221AA4D161 298 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 NEURL1O76050 574 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 AREGP15514 252 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 FOXL1Q12952 345 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 POU2AF1Q16633 256 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 SCGB1D4Q6XE38 83 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 KMT5CQ86Y97 462 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 PDPNQ86YL7 162 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 CHCHD1Q96BP2 118 aaKnown RBP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 MRAP2Q96G30 205 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 PLSCR2Q9NRY7 297 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 ECM29Q5VYK3 1845 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 KNTC1P50748 2209 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 SCN9AQ15858 1988 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 LMX1BO60663 402 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 SNAI1O95863 264 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 VSIG8P0DPA2 414 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 C2orf68Q2NKX9 166 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 AMMECR1LQ6DCA0 310 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 ANAPC13Q9BS18 74 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 PCOLCE2Q9UKZ9 415 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 A0A1B0GTL3 188 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 ZC3H12DA2A288 527 aaKnown RBP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 PRRX1P54821 245 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF121P58317 390 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF260Q3ZCT1 412 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF324BQ6AW86 544 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 RNF175Q8N4F7 328 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 OR1N2Q8NGR9 330 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 MRPL38Q96DV4 380 aaKnown RBP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 NXF5Q9H1B4 397 aaKnown RBP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 LANCL2Q9NS86 450 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 ANKRD10Q9NXR5 420 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 IL36BQ9NZH7 164 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 PMS2P1A4D2B8 440 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 ZIC2O95409 532 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 PPP1R17O96001 155 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 THY1P04216 161 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 PYY3Q5JQD4 70 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 MMD2Q8IY49 270 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 CYB5D2Q8WUJ1 264 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 OR2D2Q9H210 308 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF217O75362 1048 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms