RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 CD3DP04234 171 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 RPS2P15880 293 aaKnown RBP12.87□□□□□ -0.35
UPF1-206ENST00000598471 DNASE1P24855 282 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 ERP29P30040 261 aaKnown RBP12.87□□□□□ -0.35
UPF1-206ENST00000598471 OR3A3P47888 321 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 P2RX3P56373 397 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 AESQ08117 197 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 C6orf183Q5T699 404 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 OR52W1Q6IF63 320 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 TRAT1Q6PIZ9 186 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 Q6ZS49 121 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 MAFIPQ8WZ33 124 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 SNAPC3Q92966 411 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 COQ2Q96H96 371 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 GSX2Q9BZM3 304 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 LIME1Q9H400 295 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 NCOR1P1Q9H4R4 102 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 HRASLSQ9HDD0 168 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 KCNIP1Q9NZI2 227 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 SLC25A10Q9UBX3 287 aaPredicted RBP12.87□□□□□ -0.35
UPF1-206ENST00000598471 KIF25Q9UIL4 384 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 PCDHB10Q9UN67 800 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 FLNBO75369 2602 aaKnown RBP12.86□□□□□ -0.35
UPF1-206ENST00000598471 CEACAM18A8MTB9 384 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 DISC1C4P0D8 188 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 NDUFS8O00217 210 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 PLA2G10O15496 165 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 CD74P04233 296 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 IFNA6P05013 189 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 SELLP14151 372 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 NDUFB7P17568 137 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 GIFP27352 417 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 EDDM3BP56851 147 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 HLA-DRB3P79483 266 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 ZNF880Q6PDB4 577 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 CLEC2AQ6UVW9 174 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 ZNF525Q8N782 197 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 OR5AP2Q8NGF4 316 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 OR8B3Q8NGG8 313 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 OR4C16Q8NGL9 310 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 ENKURQ8TC29 256 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 CCDC107Q8WV48 283 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 NRGNQ92686 78 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 NEIL1Q96FI4 390 aaPredicted RBP12.86□□□□□ -0.35
UPF1-206ENST00000598471 OR8B2Q96RD0 313 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 PIMREGQ9BSJ6 248 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 C11orf54Q9H0W9 315 aaPredicted RBP12.86□□□□□ -0.35
UPF1-206ENST00000598471 RAB9BQ9NP90 201 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 BEX4Q9NWD9 120 aaPredicted RBP12.86□□□□□ -0.35
UPF1-206ENST00000598471 MCUBQ9NWR8 336 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 OR6C3Q9NZP0 311 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 LPAR3Q9UBY5 353 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 ANXA10Q9UJ72 324 aa12.86□□□□□ -0.35
UPF1-206ENST00000598471 ASH1LQ9NR48 2969 aaKnown RBP12.86□□□□□ -0.35
UPF1-206ENST00000598471 ODAMA1E959 279 aa12.85□□□□□ -0.35
UPF1-206ENST00000598471 TRDCB7Z8K6 153 aa12.85□□□□□ -0.35
UPF1-206ENST00000598471 GPR37O15354 613 aa12.85□□□□□ -0.35
UPF1-206ENST00000598471 CTXN2P0C2S0 81 aa12.85□□□□□ -0.35
UPF1-206ENST00000598471 HRH1P35367 487 aa12.85□□□□□ -0.35
UPF1-206ENST00000598471 GLIPR1P48060 266 aa12.85□□□□□ -0.35
UPF1-206ENST00000598471 DSCR9P59020 149 aa12.85□□□□□ -0.35
UPF1-206ENST00000598471 CDK10Q15131 360 aa12.85□□□□□ -0.35
UPF1-206ENST00000598471 LYPD2Q6UXB3 125 aa12.85□□□□□ -0.35
UPF1-206ENST00000598471 ZNF782Q6ZMW2 699 aaPredicted RBP12.85□□□□□ -0.35
UPF1-206ENST00000598471 ZNF554Q86TJ5 538 aa12.85□□□□□ -0.35
UPF1-206ENST00000598471 TMEM17Q86X19 198 aa12.85□□□□□ -0.35
UPF1-206ENST00000598471 MINDY2Q8NBR6 621 aa12.85□□□□□ -0.35
UPF1-206ENST00000598471 FAM168AQ92567 244 aa12.85□□□□□ -0.35
UPF1-206ENST00000598471 PERPQ96FX8 193 aa12.85□□□□□ -0.35
UPF1-206ENST00000598471 MBNL3Q9NUK0 354 aaKnown RBP12.85□□□□□ -0.35
UPF1-206ENST00000598471 NECAP2Q9NVZ3 263 aa12.85□□□□□ -0.35
UPF1-206ENST00000598471 FAM240BA0A1B0GVZ2 78 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 A0A1B0GW55 424 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 M0QYG6 137 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 DVL1O14640 695 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 FABP7O15540 132 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 PMP2P02689 132 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 AMY2AP04746 511 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 DUX4L2P0CJ85 424 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 DUX4L3P0CJ86 424 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 DUX4L4P0CJ87 422 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 DUX4L5P0CJ88 424 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 DUX4L6P0CJ89 424 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 DUX4L7P0CJ90 424 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 GLP1RP43220 463 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 NPY4RP50391 375 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 TRIM16LQ309B1 348 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 VAX1Q5SQQ9 334 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 DUX4L9Q6RFH8 374 aaPredicted RBP12.84□□□□□ -0.35
UPF1-206ENST00000598471 ARRDC1Q8N5I2 433 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 ZNF565Q8N9K5 539 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 OR4A4PQ8NGN8 299 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 DPAGT1Q9H3H5 408 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 EHFQ9NZC4 300 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 CTSZQ9UBR2 303 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 DUX4Q9UBX2 424 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 SCP2D1Q9UJQ7 156 aa12.84□□□□□ -0.35
UPF1-206ENST00000598471 TRGV10A0A0A0MS01 117 aa12.83□□□□□ -0.36
UPF1-206ENST00000598471 hADV38S2A0JD32 116 aa12.83□□□□□ -0.36
UPF1-206ENST00000598471 SPINT2O43291 252 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms