RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 HAAOP46952 286 aa14.16□□□□□ -0.14
LIG1-206ENST00000594067 TRA2AQ13595 282 aaKnown RBP eCLIP14.16□□□□□ -0.142e-6■□□□□ 8.8
LIG1-206ENST00000594067 TRIM61Q5EBN2 209 aa14.16□□□□□ -0.14
LIG1-206ENST00000594067 GAPTQ8N292 157 aa14.16□□□□□ -0.14
LIG1-206ENST00000594067 Q8WTZ3 238 aa14.16□□□□□ -0.14
LIG1-206ENST00000594067 TMEM171Q8WVE6 324 aa14.16□□□□□ -0.14
LIG1-206ENST00000594067 PLSCR2Q9NRY7 297 aa14.16□□□□□ -0.14
LIG1-206ENST00000594067 CDS2O95674 445 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 SPINK2P20155 84 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 GPM6AP51674 278 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 SRYQ05066 204 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 PRDX4Q13162 271 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 ZNF266Q14584 549 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 SELENOHQ8IZQ5 122 aaKnown RBP14.15□□□□□ -0.14
LIG1-206ENST00000594067 TECTBQ96PL2 329 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 PRDM14Q9GZV8 571 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 FAM86C1Q9NVL1 165 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 A0A087WWC5 75 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 IGKV1D-13A0A0B4J2D9 117 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 H0YL77 283 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 IGKV1-13P0DP09 117 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 ARF1P84077 181 aaKnown RBP14.15□□□□□ -0.14
LIG1-206ENST00000594067 OR8G5Q8NG78 346 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 UNKLQ9H9P5 680 aaKnown RBP14.15□□□□□ -0.14
LIG1-206ENST00000594067 Q9N2K0 584 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 KIAA1456Q9P272 454 aa14.15□□□□□ -0.14
LIG1-206ENST00000594067 TK1P04183 234 aa14.14□□□□□ -0.15
LIG1-206ENST00000594067 ERVFRD-1P60508 538 aa14.14□□□□□ -0.15
LIG1-206ENST00000594067 SRPXP78539 464 aa14.14□□□□□ -0.15
LIG1-206ENST00000594067 FAM185AQ8N0U4 392 aa14.14□□□□□ -0.15
LIG1-206ENST00000594067 NEK7Q8TDX7 302 aa14.14□□□□□ -0.15
LIG1-206ENST00000594067 CPNE4Q96A23 557 aaPredicted RBP14.14□□□□□ -0.15
LIG1-206ENST00000594067 TMEM56Q96MV1 263 aa14.14□□□□□ -0.15
LIG1-206ENST00000594067 PFDN5Q99471 154 aa14.14□□□□□ -0.15
LIG1-206ENST00000594067 GAR1Q9NY12 217 aaKnown RBP14.14□□□□□ -0.15
LIG1-206ENST00000594067 LIPGQ9Y5X9 500 aa14.14□□□□□ -0.15
LIG1-206ENST00000594067 TMEM56-RWDD3S4R434 201 aa14.14□□□□□ -0.15
LIG1-206ENST00000594067 MRPL33O75394 65 aaKnown RBP14.14□□□□□ -0.15
LIG1-206ENST00000594067 CEBPGP53567 150 aa14.14□□□□□ -0.15
LIG1-206ENST00000594067 UBE2KP61086 200 aa14.14□□□□□ -0.15
LIG1-206ENST00000594067 DLK1P80370 383 aa14.14□□□□□ -0.15
LIG1-206ENST00000594067 HERPUD1Q15011 391 aa14.14□□□□□ -0.15
LIG1-206ENST00000594067 TMEM252Q8N6L7 170 aa14.14□□□□□ -0.15
LIG1-206ENST00000594067 TCFL5Q9UL49 500 aa14.14□□□□□ -0.15
LIG1-206ENST00000594067 SLC22A20A6NK97 555 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 PROB1E7EW31 1015 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 PITX3O75364 302 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 CST7O76096 145 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 HLA-HP01893 362 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 FOXG1P55316 489 aaPredicted RBP14.13□□□□□ -0.15
LIG1-206ENST00000594067 VAMP2P63027 116 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 ZNF674Q2M3X9 581 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 SPINK14Q6IE38 97 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 SPNS3Q6ZMD2 512 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 PLEKHF2Q9H8W4 249 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 CCL28Q9NRJ3 127 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 GLRX2Q9NS18 164 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 URGCP-MRPS24S4R325 110 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 C5orf49A4QMS7 147 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 BTBD17A6NE02 478 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 TNFSF12O43508 249 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 S100A2P29034 98 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 CYB561P49447 251 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 DUSP3P51452 185 aaPredicted RBP14.13□□□□□ -0.15
LIG1-206ENST00000594067 GFRA1P56159 465 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 COLCA1Q6ZS62 124 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 ZNF429Q86V71 674 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 WDR5BQ86VZ2 330 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 TMEM217Q8N7C4 229 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 ZNF610Q8N9Z0 462 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 OR5C1Q8NGR4 320 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 SPIN2AQ99865 258 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 SPIN2BQ9BPZ2 258 aa14.13□□□□□ -0.15
LIG1-206ENST00000594067 HIST1H2BKO60814 126 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 HIST1H2BJP06899 126 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 HIST1H2BOP23527 126 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 HIST1H2BBP33778 126 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 HIST1H2BDP58876 126 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 HIST1H2BCP62807 126 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 ICAM4Q14773 271 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 HIST2H2BEQ16778 126 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.12□□□□□ -0.15
LIG1-206ENST00000594067 ODF3L1Q8IXM7 274 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 CYB561D1Q8N8Q1 229 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 ZNF383Q8NA42 475 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 Q8NFD4 153 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 HIST1H2BHQ93079 126 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 HIST1H2BNQ99877 126 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 HIST1H2BMQ99879 126 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 REPIN1Q9BWE0 567 aaKnown RBP14.12□□□□□ -0.15
LIG1-206ENST00000594067 PRRG4Q9BZD6 226 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 LYRM2Q9NU23 88 aaPredicted RBP14.12□□□□□ -0.15
LIG1-206ENST00000594067 MTCH1Q9NZJ7 389 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 ZNF732B4DXR9 585 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 C3orf80F5H4A9 247 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 SCAF4O95104 1147 aaKnown RBP14.12□□□□□ -0.15
LIG1-206ENST00000594067 TMEM50AO95807 157 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 NAPSAO96009 420 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 IGHEP01854 428 aa14.12□□□□□ -0.15
LIG1-206ENST00000594067 GPX4P36969 197 aaPredicted RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms