RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 FAM71E2Q8N5Q1 922 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 CABLES2Q9BTV7 478 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 PCDHB10Q9UN67 800 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 LSM5Q9Y4Y9 91 aaKnown RBP16.71■□□□□ 0.27
CLIP3-206ENST00000593074 WDR1O75083 606 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 SCO1O75880 301 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 AGFG2O95081 481 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 CGAP01215 116 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 ZNF44P15621 663 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 MPV17P39210 176 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 MDH2P40926 338 aaKnown RBP16.71■□□□□ 0.27
CLIP3-206ENST00000593074 TBC1D26Q86UD7 250 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 CXorf67Q86X51 503 aaPredicted RBP16.71■□□□□ 0.27
CLIP3-206ENST00000593074 SLC35G3Q8N808 338 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 ZNF565Q8N9K5 539 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 TMED6Q8WW62 240 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 OPN3Q9H1Y3 402 aaPredicted RBP16.71■□□□□ 0.27
CLIP3-206ENST00000593074 PTPRZ1P23471 2315 aaPredicted RBP16.71■□□□□ 0.26
CLIP3-206ENST00000593074 LGALS8O00214 317 aa16.7■□□□□ 0.26
CLIP3-206ENST00000593074 IGLV1-44P01699 117 aa16.7■□□□□ 0.26
CLIP3-206ENST00000593074 P2RY6Q15077 328 aa16.7■□□□□ 0.26
CLIP3-206ENST00000593074 TUSC1Q2TAM9 212 aa16.7■□□□□ 0.26
CLIP3-206ENST00000593074 SHEQ5VZ18 495 aa16.7■□□□□ 0.26
CLIP3-206ENST00000593074 GAPTQ8N292 157 aa16.7■□□□□ 0.26
CLIP3-206ENST00000593074 TMEM56Q96MV1 263 aa16.7■□□□□ 0.26
CLIP3-206ENST00000593074 PLEKHA2Q9HB19 425 aa16.7■□□□□ 0.26
CLIP3-206ENST00000593074 ZNF71Q9NQZ8 489 aaPredicted RBP16.7■□□□□ 0.26
CLIP3-206ENST00000593074 ZFP57Q9NU63 452 aa16.7■□□□□ 0.26
CLIP3-206ENST00000593074 LUZP4Q9P127 313 aa16.7■□□□□ 0.26
CLIP3-206ENST00000593074 TMEM56-RWDD3S4R434 201 aa16.7■□□□□ 0.26
CLIP3-206ENST00000593074 OR2H2O95918 312 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 SCGB1D2O95969 90 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 M6PRP20645 277 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 TUBG1P23258 451 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 ZNF146Q15072 292 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 OR8G1Q15617 311 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 MOB1BQ7L9L4 216 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 RNF141Q8WVD5 230 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 OBP2BQ9NPH6 170 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 TUBG2Q9NRH3 451 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 AMDHD2Q9Y303 409 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 E5RGE8 158 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 SLC33A1O00400 549 aaPredicted RBP16.69■□□□□ 0.26
CLIP3-206ENST00000593074 ACAA1P09110 424 aaPredicted RBP16.69■□□□□ 0.26
CLIP3-206ENST00000593074 CECR9P0C854 216 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 RCC1P18754 421 aaPredicted RBP16.69■□□□□ 0.26
CLIP3-206ENST00000593074 EIF5AP63241 154 aaKnown RBP16.69■□□□□ 0.26
CLIP3-206ENST00000593074 SPIN3Q5JUX0 258 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 TMEM268Q5VZI3 342 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 MEX3BQ6ZN04 569 aaKnown RBP16.69■□□□□ 0.26
CLIP3-206ENST00000593074 BEND4Q6ZU67 534 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 USB1Q9BQ65 265 aaKnown RBP16.69■□□□□ 0.26
CLIP3-206ENST00000593074 TAS2R3Q9NYW6 316 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 NSG2Q9Y328 171 aa16.69■□□□□ 0.26
CLIP3-206ENST00000593074 NPIPB11E5RHQ5 1161 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 CDIPTO14735 213 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 KRTCAP3Q53RY4 240 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 ZNF497Q6ZNH5 498 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 OR8G5Q8NG78 346 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 OR52M1Q8NGK5 317 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 OR4D5Q8NGN0 318 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 PIGMQ9H3S5 423 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 ZC4H2Q9NQZ6 224 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 PURGQ9UJV8 347 aaKnown RBP16.68■□□□□ 0.26
CLIP3-206ENST00000593074 SSUH2Q9Y2M2 353 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 H0YL77 283 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 MLNRO43193 412 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 NXPH2O95156 264 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 CDS2O95674 445 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 GAPDHP04406 335 aaKnown RBP16.68■□□□□ 0.26
CLIP3-206ENST00000593074 FAM157CP0CG43 387 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 FAM209AQ5JX71 171 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 ZNF324BQ6AW86 544 aaPredicted RBP16.68■□□□□ 0.26
CLIP3-206ENST00000593074 RPL7L1Q6DKI1 246 aaKnown RBP16.68■□□□□ 0.26
CLIP3-206ENST00000593074 H1FOOQ8IZA3 346 aaPredicted RBP16.68■□□□□ 0.26
CLIP3-206ENST00000593074 OR1S2Q8NGQ3 325 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 SUN5Q8TC36 379 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 SCNM1Q9BWG6 230 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 HES4Q9HCC6 221 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 OR2S2Q9NQN1 319 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 FBXL17Q9UF56 701 aa16.68■□□□□ 0.26
CLIP3-206ENST00000593074 EIF2S3LQ2VIR3 472 aaKnown RBP16.67■□□□□ 0.26
CLIP3-206ENST00000593074 C1orf185Q5T7R7 199 aa16.67■□□□□ 0.26
CLIP3-206ENST00000593074 BHLHA15Q7RTS1 189 aaPredicted RBP16.67■□□□□ 0.26
CLIP3-206ENST00000593074 OR10J5Q8NHC4 309 aa16.67■□□□□ 0.26
CLIP3-206ENST00000593074 PLPPR1Q8TBJ4 325 aa16.67■□□□□ 0.26
CLIP3-206ENST00000593074 TAF9BQ9HBM6 251 aa16.67■□□□□ 0.26
CLIP3-206ENST00000593074 CCL28Q9NRJ3 127 aa16.67■□□□□ 0.26
CLIP3-206ENST00000593074 ASF1BQ9NVP2 202 aa16.67■□□□□ 0.26
CLIP3-206ENST00000593074 TINAGQ9UJW2 476 aa16.67■□□□□ 0.26
CLIP3-206ENST00000593074 TMA7Q9Y2S6 64 aaKnown RBP16.67■□□□□ 0.26
CLIP3-206ENST00000593074 UBE2J1Q9Y385 318 aaPredicted RBP16.67■□□□□ 0.26
CLIP3-206ENST00000593074 OR2W1Q9Y3N9 320 aa16.67■□□□□ 0.26
CLIP3-206ENST00000593074 DUXBA0A1W2PPF3 345 aa16.66■□□□□ 0.26
CLIP3-206ENST00000593074 ZSCAN5BA6NJL1 495 aa16.66■□□□□ 0.26
CLIP3-206ENST00000593074 SIRPB1O00241 398 aa16.66■□□□□ 0.26
CLIP3-206ENST00000593074 KITLGP21583 273 aa16.66■□□□□ 0.26
CLIP3-206ENST00000593074 UCP1P25874 307 aa16.66■□□□□ 0.26
CLIP3-206ENST00000593074 TMEM33P57088 247 aa16.66■□□□□ 0.26
CLIP3-206ENST00000593074 CMTM1Q8IZ96 169 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms