RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 ZNF846Q147U1 533 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 ODF1Q14990 250 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 ATXN7L3Q14CW9 347 aaPredicted RBP4.42□□□□□ -1.7
LIG3-210ENST00000588109 GRK1Q15835 563 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 CDNFQ49AH0 187 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 RNASE12Q5GAN4 147 aaKnown RBP4.42□□□□□ -1.7
LIG3-210ENST00000588109 PLAC9Q5JTB6 97 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 STUMQ69YW2 141 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 PYHIN1Q6K0P9 492 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 Q6P435 159 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 DCDC5Q6ZRR9 648 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 GDPD3Q7L5L3 318 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 CCDC190Q86UF4 302 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 BPIFB2Q8N4F0 458 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 ZNF561Q8N587 486 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 FAM89BQ8N5H3 189 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 SPICQ8N5J4 248 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 CD177Q8N6Q3 437 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 FAM216BQ8N7L0 139 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 OR4M2Q8NGB6 313 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 ANGPTL6Q8NI99 470 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 SETD6Q8TBK2 473 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 MED30Q96HR3 178 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 LURAP1Q96LR2 239 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 C8orf49Q96NF6 230 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 CMSS1Q9BQ75 279 aaKnown RBP4.42□□□□□ -1.7
LIG3-210ENST00000588109 NUDT16L1Q9BRJ7 211 aaKnown RBP4.42□□□□□ -1.7
LIG3-210ENST00000588109 TMEM246Q9BRR3 403 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 FAAP24Q9BTP7 215 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 PECRQ9BY49 303 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 CHST6Q9GZX3 395 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 PPA2Q9H2U2 334 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 AUNIPQ9H7T9 357 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 TMEM165Q9HC07 324 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 ETAA1Q9NY74 926 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 ZNF581Q9P0T4 197 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 RCC2Q9P258 522 aaKnown RBP4.42□□□□□ -1.7
LIG3-210ENST00000588109 HSF4Q9ULV5 492 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 V9GYH0 126 aa4.42□□□□□ -1.7
LIG3-210ENST00000588109 A0A0A6YYJ9 748 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 TRAV24A0A0B4J272 114 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 TMEM30CPA0ZSE6 113 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 MEIS3P1A6NDR6 274 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 CEACAM18A8MTB9 384 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 FOXI3A8MTJ6 420 aaPredicted RBP4.41□□□□□ -1.7
LIG3-210ENST00000588109 SERPINE3A8MV23 424 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 H7C1Q1 480 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 MFNGO00587 321 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 DVL1O14640 695 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 SIGLEC5O15389 551 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 TPPPO94811 219 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 FSTL3O95633 263 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 IGHV2-70P01814 119 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 HLA-DQB1P01920 261 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 TK1P04183 234 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 GLAP06280 429 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 PTHLHP12272 177 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 PAX1P15863 534 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 NDUFB7P17568 137 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 LMO1P25800 156 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 PTBP1P26599 531 aaKnown RBP eCLIP4.41□□□□□ -1.7
LIG3-210ENST00000588109 GIFP27352 417 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 KCNJ3P48549 501 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 TMEM50BP56557 158 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 EDDM3BP56851 147 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 DSCR9P59020 149 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 MRPS10P82664 201 aaKnown RBP4.41□□□□□ -1.7
LIG3-210ENST00000588109 AESQ08117 197 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 PNLIPRP3Q17RR3 467 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 CLEC12BQ2HXU8 276 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 ZNF260Q3ZCT1 412 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 TMEM155Q4W5P6 130 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 LRRC10Q5BKY1 277 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 KRBOX4Q5JUW0 171 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 LCE4AQ5TA78 99 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 HACD4Q5VWC8 232 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 TRIQKQ629K1 86 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 OLFML2AQ68BL7 652 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 SIGIRRQ6IA17 410 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 LYPD2Q6UXB3 125 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 ZNF788Q6ZQV5 615 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 TRAPPC6BQ86SZ2 158 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 RTN4RL2Q86UN3 420 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 LRRC75A-AS1Q8N1F1 130 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 Q8N402 240 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 ZNRF1Q8ND25 227 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 OR4S1Q8NGB4 309 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 OR8B3Q8NGG8 313 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 OR5D13Q8NGL4 314 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 NUDCD2Q8WVJ2 157 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 FCAMRQ8WWV6 532 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 ST8SIA4Q92187 359 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 H1FXQ92522 213 aaKnown RBP4.41□□□□□ -1.7
LIG3-210ENST00000588109 DYRK2Q92630 601 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 SDSLQ96GA7 329 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 SNX22Q96L94 193 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 GAFA1Q96PS6 74 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 OR8B2Q96RD0 313 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 ABHD1Q96SE0 405 aa4.41□□□□□ -1.7
LIG3-210ENST00000588109 SULT4A1Q9BR01 284 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms