RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 GVQW1Q8N7I0 195 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 ZNF565Q8N9K5 539 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 OR4A4PQ8NGN8 299 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 OR5H2Q8NGV7 314 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 PLPPR1Q8TBJ4 325 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 DYRK2Q92630 601 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 MBD6Q96DN6 1003 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 COQ2Q96H96 371 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 DMRTB1Q96MA1 342 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 PRRT1Q99946 306 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 HDHD3Q9BSH5 251 aaPredicted RBP12.72□□□□□ -0.37
SS18-215ENST00000580642 C11orf54Q9H0W9 315 aaPredicted RBP12.72□□□□□ -0.37
SS18-215ENST00000580642 NECAP2Q9NVZ3 263 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 METRNQ9UJH8 293 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 SCP2D1Q9UJQ7 156 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 TRAPPC2LQ9UL33 140 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 DSCAMO60469 2012 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 TRBV23-1A0A0A0MS06 115 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 ODAMA1E959 279 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 MEIS3P1A6NDR6 274 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 LYNX1G3V0Z9 82 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 ADAM20O43506 726 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 IGHV4-39P01824 125 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 IFNA6P05013 189 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 LYNX1P0DP58 116 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 ARPC4P59998 168 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 HOXA4Q00056 320 aaPredicted RBP12.71□□□□□ -0.37
SS18-215ENST00000580642 AESQ08117 197 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 ATXN7L3Q14CW9 347 aaPredicted RBP12.71□□□□□ -0.37
SS18-215ENST00000580642 CDK10Q15131 360 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 OVCH2Q7RTZ1 564 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 ZNRF1Q8ND25 227 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 TMEM185AQ8NFB2 350 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 FAM216AQ8WUB2 273 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 CORO2AQ92828 525 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 NINJ1Q92982 152 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 SLC25A21Q9BQT8 299 aaPredicted RBP12.71□□□□□ -0.37
SS18-215ENST00000580642 SLC25A10Q9UBX3 287 aaPredicted RBP12.71□□□□□ -0.37
SS18-215ENST00000580642 PCDHB10Q9UN67 800 aa12.71□□□□□ -0.37
SS18-215ENST00000580642 MEIKINA0A087WXM9 373 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 FAM240BA0A1B0GVZ2 78 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 hADV38S2A0JD32 116 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 CEACAM18A8MTB9 384 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 NPIPB11E5RHQ5 1161 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 FABP7O15540 132 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 ZNF205O95201 554 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 COL8A1P27658 744 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 HLA-DMAP28067 261 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 HRH1P35367 487 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 ECI1P42126 302 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 ATP5J2P56134 94 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 HLA-DRB3P79483 266 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 HMGN3Q15651 99 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 OR8B3Q8NGG8 313 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 OR4C16Q8NGL9 310 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 ENKURQ8TC29 256 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 NEIL1Q96FI4 390 aaPredicted RBP12.7□□□□□ -0.38
SS18-215ENST00000580642 OR8B2Q96RD0 313 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 DPAGT1Q9H3H5 408 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 LINC00574Q9H8X3 128 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 ZNF230Q9UIE0 474 aaPredicted RBP12.7□□□□□ -0.38
SS18-215ENST00000580642 KIF25Q9UIL4 384 aa12.7□□□□□ -0.38
SS18-215ENST00000580642 HRNRQ86YZ3 2850 aaPredicted RBP12.69□□□□□ -0.38
SS18-215ENST00000580642 FCER2P06734 321 aa12.69□□□□□ -0.38
SS18-215ENST00000580642 WNT2P09544 360 aa12.69□□□□□ -0.38
SS18-215ENST00000580642 DNASE1P24855 282 aa12.69□□□□□ -0.38
SS18-215ENST00000580642 RFX2P48378 723 aa12.69□□□□□ -0.38
SS18-215ENST00000580642 RAG2P55895 527 aa12.69□□□□□ -0.38
SS18-215ENST00000580642 TRIM16LQ309B1 348 aa12.69□□□□□ -0.38
SS18-215ENST00000580642 OR52W1Q6IF63 320 aa12.69□□□□□ -0.38
SS18-215ENST00000580642 CLEC2AQ6UVW9 174 aa12.69□□□□□ -0.38
SS18-215ENST00000580642 DHRS11Q6UWP2 260 aa12.69□□□□□ -0.38
SS18-215ENST00000580642 FAM216BQ8N7L0 139 aa12.69□□□□□ -0.38
SS18-215ENST00000580642 CABLES2Q9BTV7 478 aa12.69□□□□□ -0.38
SS18-215ENST00000580642 PATZ1Q9HBE1 687 aaKnown RBP12.69□□□□□ -0.38
SS18-215ENST00000580642 TAS2R3Q9NYW6 316 aa12.69□□□□□ -0.38
SS18-215ENST00000580642 SLC23A1Q9UHI7 598 aa12.69□□□□□ -0.38
SS18-215ENST00000580642 UBE2J1Q9Y385 318 aaPredicted RBP12.69□□□□□ -0.38
SS18-215ENST00000580642 TRGV10A0A0A0MS01 117 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 LINC00854A0A1B0GVQ3 168 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 A0A1W2PPH5 198 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 F5H0A9 414 aaPredicted RBP12.68□□□□□ -0.38
SS18-215ENST00000580642 NDUFS7O75251 213 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 LY6HO94772 140 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 AMY2AP04746 511 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 ZNF735P0CB33 412 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 OR5H8P0DN80 308 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 RPS2P15880 293 aaKnown RBP12.68□□□□□ -0.38
SS18-215ENST00000580642 GLP1RP43220 463 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 GLIPR1P48060 266 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 SEC61A1P61619 476 aaKnown RBP12.68□□□□□ -0.38
SS18-215ENST00000580642 RBMS2Q15434 407 aaKnown RBP12.68□□□□□ -0.38
SS18-215ENST00000580642 PLA1AQ53H76 456 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 ZNF782Q6ZMW2 699 aaPredicted RBP12.68□□□□□ -0.38
SS18-215ENST00000580642 Q6ZPA2 131 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 NRARPQ7Z6K4 114 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 OR10A7Q8NGE5 316 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 OR6F1Q8NGZ6 308 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 GIMAP1Q8WWP7 306 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 SCGB3A2Q96PL1 93 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms