RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ZNF189O75820 626 aaPredicted RBP1.84□□□□□ -2.11
SS18-214ENST00000580003 SNAI1O95863 264 aaPredicted RBP1.84□□□□□ -2.11
SS18-214ENST00000580003 PLTPP55058 493 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 RAB38P57729 211 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 GUSBP1Q15486 140 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 FAM58AQ8N1B3 248 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 FAM184AQ8NB25 1140 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 OR6K2Q8NGY2 324 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 SPPL2BQ8TCT7 592 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 PITX2Q99697 317 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 MAP1LC3CQ9BXW4 147 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 GAL3ST2Q9H3Q3 398 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 RPRD1BQ9NQG5 326 aaKnown RBP1.84□□□□□ -2.11
SS18-214ENST00000580003 DDX18Q9NVP1 670 aaKnown RBP1.84□□□□□ -2.11
SS18-214ENST00000580003 POMPQ9Y244 141 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 OTOFQ9HC10 1997 aa1.84□□□□□ -2.11
SS18-214ENST00000580003 LOC102725191A0A1B0GVB3 256 aa1.83□□□□□ -2.12
SS18-214ENST00000580003 FNDC10F2Z333 226 aa1.83□□□□□ -2.12
SS18-214ENST00000580003 F8VP50 259 aa1.83□□□□□ -2.12
SS18-214ENST00000580003 GZMBP10144 247 aa1.83□□□□□ -2.12
SS18-214ENST00000580003 CPN2P22792 545 aa1.83□□□□□ -2.12
SS18-214ENST00000580003 CBX5P45973 191 aa1.83□□□□□ -2.12
SS18-214ENST00000580003 GABRA4P48169 554 aa1.83□□□□□ -2.12
SS18-214ENST00000580003 STK38Q15208 465 aa1.83□□□□□ -2.12
SS18-214ENST00000580003 OR4A15Q8NGL6 344 aa1.83□□□□□ -2.12
SS18-214ENST00000580003 PDCD6IPQ8WUM4 868 aaKnown RBP1.83□□□□□ -2.12
SS18-214ENST00000580003 ZNF396Q96N95 335 aaPredicted RBP1.83□□□□□ -2.12
SS18-214ENST00000580003 TENM1Q9UKZ4 2725 aa1.82□□□□□ -2.12
SS18-214ENST00000580003 IGKV2-29A2NJV5 120 aaPredicted RBP1.82□□□□□ -2.12
SS18-214ENST00000580003 TRAPPC3O43617 180 aa1.82□□□□□ -2.12
SS18-214ENST00000580003 CA2P00918 260 aa1.82□□□□□ -2.12
SS18-214ENST00000580003 ZIC4Q8N9L1 334 aa1.82□□□□□ -2.12
SS18-214ENST00000580003 GATD1Q8NB37 220 aa1.82□□□□□ -2.12
SS18-214ENST00000580003 OR8G5Q8NG78 346 aa1.82□□□□□ -2.12
SS18-214ENST00000580003 CDKL2Q92772 493 aa1.82□□□□□ -2.12
SS18-214ENST00000580003 CLDN23Q96B33 292 aa1.82□□□□□ -2.12
SS18-214ENST00000580003 CAPZA3Q96KX2 299 aa1.82□□□□□ -2.12
SS18-214ENST00000580003 ZNF251Q9BRH9 671 aa1.82□□□□□ -2.12
SS18-214ENST00000580003 COPS4Q9BT78 406 aa1.82□□□□□ -2.12
SS18-214ENST00000580003 SUCNR1Q9BXA5 334 aa1.82□□□□□ -2.12
SS18-214ENST00000580003 TDRD3Q9H7E2 651 aaKnown RBP1.82□□□□□ -2.12
SS18-214ENST00000580003 OR51B4Q9Y5P0 310 aa1.82□□□□□ -2.12
SS18-214ENST00000580003 SLIT2O94813 1529 aa1.81□□□□□ -2.12
SS18-214ENST00000580003 COL4A2P08572 1712 aa1.81□□□□□ -2.12
SS18-214ENST00000580003 A0A0J9YX75 114 aa1.81□□□□□ -2.12
SS18-214ENST00000580003 A8MWP6 167 aa1.81□□□□□ -2.12
SS18-214ENST00000580003 RFXANKO14593 260 aa1.81□□□□□ -2.12
SS18-214ENST00000580003 PDCD6O75340 191 aa1.81□□□□□ -2.12
SS18-214ENST00000580003 ZNF7P17097 686 aaPredicted RBP1.81□□□□□ -2.12
SS18-214ENST00000580003 HBG1P69891 147 aa1.81□□□□□ -2.12
SS18-214ENST00000580003 HBG2P69892 147 aa1.81□□□□□ -2.12
SS18-214ENST00000580003 SS18Q15532 418 aa1.81□□□□□ -2.12
SS18-214ENST00000580003 OR8G1Q15617 311 aa1.81□□□□□ -2.12
SS18-214ENST00000580003 OLIG3Q7RTU3 272 aa1.81□□□□□ -2.12
SS18-214ENST00000580003 SLC25A45Q8N413 288 aa1.81□□□□□ -2.12
SS18-214ENST00000580003 SYT4Q9H2B2 425 aa1.81□□□□□ -2.12
SS18-214ENST00000580003 FAM206AQ9NX38 181 aa1.81□□□□□ -2.12
SS18-214ENST00000580003 IGHV3OR15-7A0A075B7D8 119 aa1.8□□□□□ -2.12
SS18-214ENST00000580003 IGSF23A1L1A6 192 aa1.8□□□□□ -2.12
SS18-214ENST00000580003 I3L4J1 428 aa1.8□□□□□ -2.12
SS18-214ENST00000580003 KDELR3O43731 214 aa1.8□□□□□ -2.12
SS18-214ENST00000580003 IGKV5-2P06315 115 aa1.8□□□□□ -2.12
SS18-214ENST00000580003 SFTPCP11686 197 aa1.8□□□□□ -2.12
SS18-214ENST00000580003 ZNF3P17036 446 aa1.8□□□□□ -2.12
SS18-214ENST00000580003 PYCR1P32322 319 aa1.8□□□□□ -2.12
SS18-214ENST00000580003 DEKP35659 375 aaKnown RBP1.8□□□□□ -2.12
SS18-214ENST00000580003 RHOAP61586 193 aa1.8□□□□□ -2.12
SS18-214ENST00000580003 TSPAN31Q12999 210 aa1.8□□□□□ -2.12
SS18-214ENST00000580003 HES1Q14469 280 aa1.8□□□□□ -2.12
SS18-214ENST00000580003 SSX7Q7RTT5 188 aa1.8□□□□□ -2.12
SS18-214ENST00000580003 DEFB119Q8N690 84 aa1.8□□□□□ -2.12
SS18-214ENST00000580003 TM6SF2Q9BZW4 377 aa1.8□□□□□ -2.12
SS18-214ENST00000580003 ALX4Q9H161 411 aaPredicted RBP1.8□□□□□ -2.12
SS18-214ENST00000580003 SIGLEC16A6NMB1 481 aa1.79□□□□□ -2.12
SS18-214ENST00000580003 TOR1AO14656 332 aa1.79□□□□□ -2.12
SS18-214ENST00000580003 GIMD1P0DJR0 217 aa1.79□□□□□ -2.12
SS18-214ENST00000580003 MAGEA3P43357 314 aa1.79□□□□□ -2.12
SS18-214ENST00000580003 FAM19A1Q7Z5A9 133 aa1.79□□□□□ -2.12
SS18-214ENST00000580003 CD200R1Q8TD46 325 aa1.79□□□□□ -2.12
SS18-214ENST00000580003 DCANP1Q8TF63 244 aa1.79□□□□□ -2.12
SS18-214ENST00000580003 GTF2H4Q92759 462 aa1.79□□□□□ -2.12
SS18-214ENST00000580003 ZNF625Q96I27 306 aaPredicted RBP1.79□□□□□ -2.12
SS18-214ENST00000580003 CIB1Q99828 191 aa1.79□□□□□ -2.12
SS18-214ENST00000580003 FBXL3Q9UKT7 428 aa1.79□□□□□ -2.12
SS18-214ENST00000580003 MPDZO75970 2070 aa1.79□□□□□ -2.12
SS18-214ENST00000580003 TRPM3Q9HCF6 1732 aaPredicted RBP1.78□□□□□ -2.12
SS18-214ENST00000580003 E7EWF7 191 aa1.78□□□□□ -2.12
SS18-214ENST00000580003 RANBP1P43487 201 aa1.78□□□□□ -2.12
SS18-214ENST00000580003 ACTL10Q5JWF8 245 aa1.78□□□□□ -2.12
SS18-214ENST00000580003 CLEC20AQ6ZU45 233 aa1.78□□□□□ -2.12
SS18-214ENST00000580003 OR4K17Q8NGC6 315 aa1.78□□□□□ -2.12
SS18-214ENST00000580003 HEY1Q9Y5J3 304 aa1.78□□□□□ -2.12
SS18-214ENST00000580003 ARAP3Q8WWN8 1544 aa1.77□□□□□ -2.13
SS18-214ENST00000580003 TMEM250H0YL14 139 aa1.77□□□□□ -2.13
SS18-214ENST00000580003 DENRO43583 198 aaKnown RBP1.77□□□□□ -2.13
SS18-214ENST00000580003 STAG3L2P0CL84 134 aa1.77□□□□□ -2.13
SS18-214ENST00000580003 GTF2H1P32780 548 aa1.77□□□□□ -2.13
SS18-214ENST00000580003 HSPA13P48723 471 aa1.77□□□□□ -2.13
SS18-214ENST00000580003 HTR4Q13639 388 aa1.77□□□□□ -2.13
SS18-214ENST00000580003 N4BP2L1Q5TBK1 243 aaPredicted RBP1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms