RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 PIRTP0C851 137 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 HIST1H1EP10412 219 aaKnown RBP3.29□□□□□ -1.88
NUP88-213ENST00000576862 ADRB3P13945 408 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 CD70P32970 193 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 NUDT1P36639 197 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 CRYBA4P53673 196 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 APOC4P55056 127 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 PSPHP78330 225 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 ACVR1Q04771 509 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 SHHQ15465 462 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 MPPED2Q15777 294 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 TTLL9Q3SXZ7 439 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 SPIN4Q56A73 249 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 N4BP2L1Q5TBK1 243 aaPredicted RBP3.29□□□□□ -1.88
NUP88-213ENST00000576862 ZFP1Q6P2D0 407 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 WDR74Q6RFH5 385 aaPredicted RBP3.29□□□□□ -1.88
NUP88-213ENST00000576862 UNQ9370/PRO34162Q6UXP9 181 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 GDPD3Q7L5L3 318 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 NIT1Q86X76 327 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 CMTM1Q8IZ96 169 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 KIR2DL5AQ8N109 375 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 STX19Q8N4C7 294 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 CLDN22Q8N7P3 220 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 OR4D9Q8NGE8 314 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 OR10X1Q8NGY0 326 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 KIR2DL5BQ8NHK3 375 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 COQ8AQ8NI60 647 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 KCTD7Q96MP8 289 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 OR5B12Q96R08 314 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 GPR22Q99680 433 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 ARHGDIGQ99819 225 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 HOPXQ9BPY8 73 aaPredicted RBP3.29□□□□□ -1.88
NUP88-213ENST00000576862 NAA50Q9GZZ1 169 aaKnown RBP3.29□□□□□ -1.88
NUP88-213ENST00000576862 DSN1Q9H410 356 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 TMEM27Q9HBJ8 222 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 SH2D2AQ9NP31 389 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 FGF20Q9NP95 211 aaPredicted RBP3.29□□□□□ -1.88
NUP88-213ENST00000576862 SPANXA1Q9NS26 97 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 HRASLS2Q9NWW9 162 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 SDHAF2Q9NX18 166 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 LSM7Q9UK45 103 aaKnown RBP3.29□□□□□ -1.88
NUP88-213ENST00000576862 FBXO5Q9UKT4 447 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 FARSAQ9Y285 508 aaKnown RBP3.29□□□□□ -1.88
NUP88-213ENST00000576862 OARD1Q9Y530 152 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 DNAH12Q6ZR08 3092 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 BRCA2P51587 3418 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 PDCD11Q14690 1871 aaKnown RBP3.28□□□□□ -1.88
NUP88-213ENST00000576862 TANC1Q9C0D5 1861 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 KIR2DS1A0A191URI9 304 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 METTL15A6NJ78 407 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 GJE1A6NN92 205 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 TSTD3H0UI37 97 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 KPNA4O00629 521 aaPredicted RBP3.28□□□□□ -1.88
NUP88-213ENST00000576862 PLPP1O14494 284 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 EDF1O60869 148 aaKnown RBP3.28□□□□□ -1.88
NUP88-213ENST00000576862 NPIPB7O75200 414 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 CA11O75493 328 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 OR7A10O76100 309 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 OXSR1O95747 527 aaPredicted RBP3.28□□□□□ -1.88
NUP88-213ENST00000576862 MT-ND4P03905 459 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 RLN2P04090 185 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 IGKV3-11P04433 115 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 BPGMP07738 259 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 CST2P09228 141 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 HTR1DP28221 377 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 HTR1EP28566 365 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 HTR1FP30939 366 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 TTPAP49638 278 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 ERFP50548 548 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 ZNF140P52738 457 aaPredicted RBP3.28□□□□□ -1.88
NUP88-213ENST00000576862 CDC42P60953 191 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 RHOAP61586 193 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 KIR2DS1Q14954 304 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 MBOAT2Q6ZWT7 520 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 TMEM144Q7Z5S9 345 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 SLC30A8Q8IWU4 369 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 SUMF2Q8NBJ7 301 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 OR13C4Q8NGS5 318 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 OR2AE1Q8NHA4 323 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 DOK4Q8TEW6 326 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 C16orf78Q8WTQ4 265 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 KCTD4Q8WVF5 259 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 C10orf82Q8WW14 230 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 RAB8BQ92930 207 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 TESCQ96BS2 214 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 SFRP2Q96HF1 295 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 RNF2Q99496 336 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 SLC25A39Q9BZJ4 359 aaPredicted RBP3.28□□□□□ -1.88
NUP88-213ENST00000576862 C20orf27Q9GZN8 174 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 CHRNA10Q9GZZ6 450 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 LINC00597Q9H2U6 94 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 RDH14Q9HBH5 336 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 RETNQ9HD89 108 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 TMEM216Q9P0N5 145 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 CD84Q9UIB8 345 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 SLC22A7Q9Y694 548 aa3.28□□□□□ -1.88
NUP88-213ENST00000576862 CEP290O15078 2479 aa3.27□□□□□ -1.89
NUP88-213ENST00000576862 NLRC5Q86WI3 1866 aa3.27□□□□□ -1.89
NUP88-213ENST00000576862 TRAV8-7A0A075B6U6 113 aa3.27□□□□□ -1.89
NUP88-213ENST00000576862 IGHV2-70DA0A0C4DH43 119 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms