RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 NOVA1P51513 510 aaKnown RBP8.61□□□□□ -1.03
VPS53-220ENST00000576149 SOX8P57073 446 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 BLOC1S1P78537 153 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 IL24Q13007 206 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 GUCA2BQ16661 112 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 FAM74A3Q4VXF1 159 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 BTNL8Q6UX41 500 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 ZNF818PQ6ZRF7 136 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 TBC1D26Q86UD7 250 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 PUSL1Q8N0Z8 303 aaKnown RBP8.61□□□□□ -1.03
VPS53-220ENST00000576149 SUMF2Q8NBJ7 301 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 NEK7Q8TDX7 302 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 SECTM1Q8WVN6 248 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 BSCL2Q96G97 398 aaPredicted RBP8.61□□□□□ -1.03
VPS53-220ENST00000576149 USB1Q9BQ65 265 aaKnown RBP8.61□□□□□ -1.03
VPS53-220ENST00000576149 RHOFQ9HBH0 211 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 PARP11Q9NR21 331 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 UQCC1Q9NVA1 299 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 ZDHHC8Q9ULC8 765 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 ZNF175Q9Y473 711 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 KNTC1P50748 2209 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 IGKV1-6A0A0C4DH72 117 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 F8W036 122 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 CDS2O95674 445 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 TRIP6Q15654 476 aaKnown RBP8.6□□□□□ -1.03
VPS53-220ENST00000576149 OR2T2Q6IF00 324 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 CLEC9AQ6UXN8 241 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 TMEM178AQ8NBL3 297 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 DMBX1Q8NFW5 382 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 MRPL30Q8TCC3 161 aaKnown RBP8.6□□□□□ -1.03
VPS53-220ENST00000576149 ZNF488Q96MN9 340 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 SEC11CQ9BY50 192 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 PKIBQ9C010 78 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 TLNRD1Q9H1K6 362 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 OR51B6Q9H340 312 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 OR51I2Q9H344 312 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 TMEM231Q9H6L2 316 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 TREM1Q9NP99 234 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 POMT1Q9Y6A1 747 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 DNAJC13O75165 2243 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 NCOR1O75376 2440 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 TRBV6-6A0A0A6YYG2 114 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 TRAV24A0A0B4J272 114 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 IGKV1D-13A0A0B4J2D9 117 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 SLC34A2O95436 690 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 SNRNP70P08621 437 aaKnown RBP8.6□□□□□ -1.03
VPS53-220ENST00000576149 IGKV1-13P0DP09 117 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 MUC1P15941 1255 aaPredicted RBP8.6□□□□□ -1.03
VPS53-220ENST00000576149 CA6P23280 308 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 SPIN3Q5JUX0 258 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 C20orf204Q6ZNR8 217 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 FAM58AQ8N1B3 248 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 GAPTQ8N292 157 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 LYPD6BQ8NI32 183 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 IFT22Q9H7X7 185 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 WFDC1Q9HC57 220 aa8.6□□□□□ -1.03
VPS53-220ENST00000576149 RCL1Q9Y2P8 373 aaKnown RBP8.6□□□□□ -1.03
VPS53-220ENST00000576149 UBE2J1Q9Y385 318 aaPredicted RBP8.6□□□□□ -1.03
VPS53-220ENST00000576149 A0A1W2PPH5 198 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 NKX2-6A6NCS4 301 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 J3QW42 95 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 SEC11BP0C7V7 166 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 SPINK2P20155 84 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 ZNF169Q14929 603 aaPredicted RBP8.59□□□□□ -1.03
VPS53-220ENST00000576149 SHEQ5VZ18 495 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 ZNF880Q6PDB4 577 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 PCSK4Q6UW60 755 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 TMPRSS7Q7RTY8 843 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 ZNF695Q8IW36 515 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 SELENOHQ8IZQ5 122 aaKnown RBP8.59□□□□□ -1.03
VPS53-220ENST00000576149 SPAG16Q8N0X2 631 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 NINJ1Q92982 152 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 GMPPAQ96IJ6 420 aaPredicted RBP8.59□□□□□ -1.03
VPS53-220ENST00000576149 C11orf1Q9H5F2 150 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 FAM96BQ9Y3D0 163 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 CBY1Q9Y3M2 126 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 ARHGAP21Q5T5U3 1957 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 BORCS7-ASMTA0A0B4J1R7 106 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 TOR1AO14656 332 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 HS3ST1O14792 307 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 RHBDL1O75783 438 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 ZNF14P17017 642 aaPredicted RBP8.59□□□□□ -1.03
VPS53-220ENST00000576149 TNFSF10P50591 281 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 F2RL1P55085 397 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 GNMTQ14749 295 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 TBC1D28Q2M2D7 210 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 SPATA46Q5T0L3 261 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 Q6ZRG5 221 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 VASH2Q86V25 355 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 C17orf78Q8N4C9 275 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 WNT2BQ93097 391 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 NRIP2Q9BQI9 281 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 GINS3Q9BRX5 216 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 CCL28Q9NRJ3 127 aa8.59□□□□□ -1.03
VPS53-220ENST00000576149 FAM212BQ9NTI7 297 aaPredicted RBP8.59□□□□□ -1.03
VPS53-220ENST00000576149 PURGQ9UJV8 347 aaKnown RBP8.59□□□□□ -1.03
VPS53-220ENST00000576149 RNASEK-C17orf49H0YIS7 233 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 J3QT63 122 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 CD5P06127 495 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 UCP1P25874 307 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms