RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 TRAV17A0A0B4J275 112 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 GOSR2O14653 212 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 PPP1R2P9O14990 202 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 PRKYO43930 277 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 RBMXL2O75526 392 aaKnown RBP5.75□□□□□ -1.49
VPS53-217ENST00000575100 PPP1R3DO95685 299 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 IGF2P01344 180 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 CDK1P06493 297 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 CD36P16671 472 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 ZNF17P17021 662 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 GGT2P36268 569 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 TMEM33P57088 247 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 HSF1Q00613 529 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 RPL18Q07020 188 aaKnown RBP5.75□□□□□ -1.49
VPS53-217ENST00000575100 ZNF169Q14929 603 aaPredicted RBP5.75□□□□□ -1.49
VPS53-217ENST00000575100 IDNKQ5T6J7 187 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 C12orf73Q69YU5 71 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 ZNF324BQ6AW86 544 aaPredicted RBP5.75□□□□□ -1.49
VPS53-217ENST00000575100 SMARCD3Q6STE5 483 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 LRRC18Q8N456 261 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 CLDN22Q8N7P3 220 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 TPRX1Q8N7U7 411 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 ZNF555Q8NEP9 628 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 OR4F17Q8NGA8 305 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 OR4F5Q8NH21 305 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 LYPD6BQ8NI32 183 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 ZPLD1Q8TCW7 415 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 DDIT4LQ96D03 193 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 OR4F4Q96R69 305 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 SRXN1Q9BYN0 137 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 ACTR6Q9GZN1 396 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 ZDHHC11Q9H8X9 412 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 PATZ1Q9HBE1 687 aaKnown RBP5.75□□□□□ -1.49
VPS53-217ENST00000575100 SPRR3Q9UBC9 169 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 OPN4Q9UHM6 478 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 FBXL3Q9UKT7 428 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 COPS3Q9UNS2 423 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 PDZD2O15018 2839 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 F8P00451 2351 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 SMIM31A0A1B0GVY4 71 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 FAM183AA6NL82 134 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 C11orf98E9PRG8 122 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 LOC110117498-PIK3R3F6TDL0 507 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 PLPP3O14495 311 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 ZG16O60844 167 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 ZP3P21754 424 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 LHX2P50458 406 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 TDGF1P3P51864 188 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 XGP55808 180 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 IL5RAQ01344 420 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 MAD2L1BPQ15013 274 aaPredicted RBP5.75□□□□□ -1.49
VPS53-217ENST00000575100 TMPPEQ6ZT21 453 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 AHSA2Q719I0 299 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 TCEANCQ8N8B7 351 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 MFSD8Q8NHS3 518 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 ZNF486Q96H40 463 aaPredicted RBP5.75□□□□□ -1.49
VPS53-217ENST00000575100 ADGRG7Q96K78 797 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 C4orf45Q96LM5 186 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 CLCC1Q96S66 551 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 HCAR1Q9BXC0 346 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 FKRPQ9H9S5 495 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 AMBNQ9NP70 447 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 FGF20Q9NP95 211 aaPredicted RBP5.75□□□□□ -1.49
VPS53-217ENST00000575100 KRCC1Q9NPI7 259 aaPredicted RBP5.75□□□□□ -1.49
VPS53-217ENST00000575100 TVP23BQ9NYZ1 205 aa5.75□□□□□ -1.49
VPS53-217ENST00000575100 EXOSC1Q9Y3B2 195 aaKnown RBP5.75□□□□□ -1.49
VPS53-217ENST00000575100 MRPS18CQ9Y3D5 142 aaKnown RBP5.75□□□□□ -1.49
VPS53-217ENST00000575100 MYO7BQ6PIF6 2116 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 ZNF407Q9C0G0 2248 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 OTOGQ6ZRI0 2925 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 A6NIZ1 184 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 K7EN84 100 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 XPNPEP2O43895 674 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 NDUFB2O95178 105 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 ADRA2AP08913 450 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 NBEAP1P0C6P0 100 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 HIST1H1CP16403 213 aaKnown RBP5.74□□□□□ -1.49
VPS53-217ENST00000575100 MGMTP16455 207 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 FMO3P31513 532 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 RPL35P42766 123 aaKnown RBP5.74□□□□□ -1.49
VPS53-217ENST00000575100 FGF8P55075 233 aaPredicted RBP5.74□□□□□ -1.49
VPS53-217ENST00000575100 H3F3AP84243 136 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 PUDPQ08623 228 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 UBE2V2Q15819 145 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 PGGHGQ32M88 737 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 OR2G6Q5TZ20 316 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 PEG10Q86TG7 708 aaKnown RBP5.74□□□□□ -1.49
VPS53-217ENST00000575100 CMTM1Q8IZ96 169 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 C8orf59Q8N0T1 100 aaPredicted RBP5.74□□□□□ -1.49
VPS53-217ENST00000575100 OR2T33Q8NG76 320 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 OR5J2Q8NH18 312 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 RHOXF1Q8NHV9 184 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 ZNRF4Q8WWF5 429 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 ITLN2Q8WWU7 325 aaPredicted RBP5.74□□□□□ -1.49
VPS53-217ENST00000575100 IGFBPL1Q8WX77 278 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 UFD1Q92890 307 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 Q96M85 177 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 MICU1Q9BPX6 476 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 MAP6D1Q9H9H5 199 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 NRN1Q9NPD7 142 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms