RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 EPPINO95925 133 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 CRYAAP02489 173 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 CELA2AP08217 269 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 LINC00614P0C842 121 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 TCP1P17987 556 aaKnown RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 RAB5AP20339 215 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 BCL3P20749 454 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 CALML3P27482 149 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 SLC6A1P30531 599 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 FCGR2CP31995 323 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 RPL5P46777 297 aaKnown RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 SELENOPP49908 381 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 ZNF133P52736 654 aaPredicted RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 RAB38P57729 211 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OR12D2P58182 307 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 RPL19P84098 196 aaKnown RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 CCDC153Q494R4 210 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 CCDC58Q4VC31 144 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 LY6G5CQ5SRR4 150 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OGFRL1Q5TC84 451 aaPredicted RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 OTUD1Q5VV17 481 aaPredicted RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 OLFML2AQ68BL7 652 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 TMEM215Q68D42 235 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 ZNF774Q6NX45 483 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OLIG3Q7RTU3 272 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 TMEM150AQ86TG1 271 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 TMEM135Q86UB9 458 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 PIM3Q86V86 326 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 RAB43Q86YS6 212 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 C9orf40Q8IXQ3 194 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 SLC22A18ASQ8N1D0 253 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 ZCCHC24Q8N2G6 241 aaKnown RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 SMIM20Q8N5G0 67 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 ZNF614Q8N883 585 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 ATP6V1C2Q8NEY4 427 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OR11H1Q8NG94 326 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OR4K17Q8NGC6 315 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OR10AD1Q8NGE0 317 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OR4D10Q8NGI6 311 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OR52E2Q8NGJ4 325 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OR51G1Q8NGK1 321 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OR10G8Q8NGN5 311 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OR2A1Q8NGT9 310 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OR13D1Q8NGV5 346 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OR1P1Q8NH06 330 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OR11H2Q8NH07 326 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 RFESDQ8TAC1 157 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 Q8WTZ3 238 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 SDR42E1Q8WUS8 393 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 TCTEX1D2Q8WW35 142 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 RXFP2Q8WXD0 754 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 ASB13Q8WXK3 278 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 RERGQ96A58 199 aaPredicted RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 TCEAL4Q96EI5 215 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 ATXN7L3BQ96GX2 97 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 PRAC1Q96KF2 57 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 LINC00477Q96M19 166 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 RBP7Q96R05 134 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 ZNF300Q96RE9 604 aaPredicted RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 ZNF2Q9BSG1 426 aaPredicted RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 MRPS26Q9BYN8 205 aaKnown RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 CHST5Q9GZS9 411 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 HOXD1Q9GZZ0 328 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 ALX4Q9H161 411 aaPredicted RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 WDR13Q9H1Z4 485 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 MIXL1Q9H2W2 232 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 GNB4Q9HAV0 340 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 LRTM1Q9HBL6 345 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 EXOSC3Q9NQT5 275 aaKnown RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 ARMC1Q9NVT9 282 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OCIAD1Q9NX40 245 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 GLTPQ9NZD2 209 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 SLC2A6Q9UGQ3 507 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 PRO0628Q9UI54 55 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 SIGLEC9Q9Y336 463 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 FBXO7Q9Y3I1 522 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 TESMINQ9Y4I5 508 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 CCDC171Q6TFL3 1326 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 ZNF532Q9HCE3 1301 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 SCN2AQ99250 2005 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 NCOA6Q14686 2063 aaPredicted RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 IGHV3OR16-12A0A075B7B8 117 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 A0A1B0GV72 72 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 RPS10-NUDT3A0A1W2PQS6 291 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 PRORSD1PA6NEY8 169 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 ZNF98A6NK75 572 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 F5H5K5 113 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 H7C0C1 242 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 K7EQD1 137 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 SLC17A2O00624 439 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 SLC31A2O15432 143 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 ZNF207O43670 478 aaKnown RBP2.31□□□□□ -2.04
VPS35-209ENST00000568642 DCTN3O75935 186 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 KRT75O95678 551 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 SNAP29O95721 258 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 NUDT3O95989 172 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 HPRT1P00492 218 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 RLN2P04090 185 aa2.31□□□□□ -2.04
VPS35-209ENST00000568642 REG1AP05451 166 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms