RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 OR10J3Q5JRS4 329 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 RBM48Q5RL73 367 aaKnown RBP0.87□□□□□ -2.27
VPS35-207ENST00000568191 FAM27D1Q5T7N8 215 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 SDHAF4Q5VUM1 108 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 RESP18Q5W5W9 173 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 THOC7Q6I9Y2 204 aaKnown RBP0.87□□□□□ -2.27
VPS35-207ENST00000568191 OR2T5Q6IEZ7 315 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 NIPAL1Q6NVV3 410 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 RWDD4Q6NW29 188 aaKnown RBP0.87□□□□□ -2.27
VPS35-207ENST00000568191 EPGNQ6UW88 154 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 DRAM2Q6UX65 266 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 Q6ZT83 130 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 FA2HQ7L5A8 372 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 HS3ST5Q8IZT8 346 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 DAW1Q8N136 415 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 CA13Q8N1Q1 262 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 ZCCHC24Q8N2G6 241 aaKnown RBP0.87□□□□□ -2.27
VPS35-207ENST00000568191 Q8N402 240 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 ATPAF2Q8N5M1 289 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 TMEM251Q8N6I4 163 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 CCDC112Q8NEF3 446 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 LFNGQ8NES3 379 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 ATP6V1C2Q8NEY4 427 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 OR4M2Q8NGB6 313 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 OR10Z1Q8NGY1 313 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 OR2T29Q8NH02 315 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 ERMNQ8TAM6 284 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 ACTL9Q8TC94 416 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 DYNC2LI1Q8TCX1 351 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 SFXN5Q8TD22 340 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 ITLN2Q8WWU7 325 aaPredicted RBP0.87□□□□□ -2.27
VPS35-207ENST00000568191 UBE2E2Q96LR5 201 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 SCGB3A2Q96PL1 93 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 DERL3Q96Q80 235 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 HBEGFQ99075 208 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 TSNAXQ99598 290 aaKnown RBP0.87□□□□□ -2.27
VPS35-207ENST00000568191 GABRG3Q99928 467 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 OR51B6Q9H340 312 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 REEP1Q9H902 201 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 HRASLSQ9HDD0 168 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 PAQR5Q9NXK6 330 aaPredicted RBP0.87□□□□□ -2.27
VPS35-207ENST00000568191 CES1P1Q9UKY3 287 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 RAB22AQ9UL26 194 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 TFR2Q9UP52 801 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 CFL2Q9Y281 166 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 ACOT9Q9Y305 439 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 KLF12Q9Y4X4 402 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 MTCH2Q9Y6C9 303 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 DOCK3Q8IZD9 2030 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 ADGRL3Q9HAR2 1447 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 PLXNB3Q9ULL4 1909 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 PEG3Q9GZU2 1588 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 ANKRD30AQ9BXX3 1397 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 RAB3GAP2Q9H2M9 1393 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 IGHV2OR16-5A0A0B4J2B6 119 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 SLC5A10A0PJK1 596 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 ISPDA4D126 451 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 OR5K4A6NMS3 321 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 E5RI56 91 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 F5H768 121 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 M0R036 132 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 PGRMC1O00264 195 aaKnown RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 ZNF593O00488 134 aaPredicted RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 CDIPTO14735 213 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 ACOX3O15254 700 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 BIRC5O15392 142 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 CRXO43186 299 aaPredicted RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 HPGDSO60760 199 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 SHOX2O60902 331 aaPredicted RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 ATP6V1G2O95670 118 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 SNAP29O95721 258 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 ASS1P00966 412 aaKnown RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 GCGP01275 180 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 CD8AP01732 235 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 APOEP02649 317 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 MAS1P04201 325 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 TCRBP04435 133 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 CDK1P06493 297 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 OR5AL1P0C617 328 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 SEC11BP0C7V7 166 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 LIMS3P0CW19 117 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 LIMS4P0CW20 117 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 NQO1P15559 274 aaKnown RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 HIST1H1CP16403 213 aaKnown RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 MYL9P24844 172 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 G0S2P27469 103 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 ARL2P36404 184 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 CBX5P45973 191 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 CAPZBP47756 277 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 HSPA13P48723 471 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 GNG10P50151 68 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 SERPINB9P50453 376 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 STC1P52823 247 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 AP2S1P53680 142 aaPredicted RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 AQP5P55064 265 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 CLDN12P56749 244 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 ARPC4P59998 168 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 CXCR4P61073 352 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 RHOAP61586 193 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 PPP1CAP62136 330 aa0.86□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms