RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 PYHIN1Q6K0P9 492 aa13.71□□□□□ -0.21
VPS4A-202ENST00000562754 BTN2A1Q7KYR7 527 aa13.71□□□□□ -0.21
VPS4A-202ENST00000562754 OR4K15Q8NH41 348 aa13.71□□□□□ -0.21
VPS4A-202ENST00000562754 MEIKINA0A087WXM9 373 aa13.7□□□□□ -0.22
VPS4A-202ENST00000562754 TRBV6-6A0A0A6YYG2 114 aa13.7□□□□□ -0.22
VPS4A-202ENST00000562754 GPR37O15354 613 aa13.7□□□□□ -0.22
VPS4A-202ENST00000562754 FCGR3AP08637 254 aa13.7□□□□□ -0.22
VPS4A-202ENST00000562754 INHBBP09529 407 aa13.7□□□□□ -0.22
VPS4A-202ENST00000562754 LCN2P80188 198 aa13.7□□□□□ -0.22
VPS4A-202ENST00000562754 DGCR2P98153 550 aa13.7□□□□□ -0.22
VPS4A-202ENST00000562754 ZNF273Q14593 569 aa13.7□□□□□ -0.22
VPS4A-202ENST00000562754 ZNF880Q6PDB4 577 aa13.7□□□□□ -0.22
VPS4A-202ENST00000562754 CIARTQ8N365 385 aaPredicted RBP13.7□□□□□ -0.22
VPS4A-202ENST00000562754 OR13A1Q8NGR1 328 aa13.7□□□□□ -0.22
VPS4A-202ENST00000562754 C8orf46Q8TAG6 207 aa13.7□□□□□ -0.22
VPS4A-202ENST00000562754 GPX8Q8TED1 209 aa13.7□□□□□ -0.22
VPS4A-202ENST00000562754 CCDC107Q8WV48 283 aa13.7□□□□□ -0.22
VPS4A-202ENST00000562754 DACT3Q96B18 629 aaPredicted RBP13.7□□□□□ -0.22
VPS4A-202ENST00000562754 C1orf159Q96HA4 380 aa13.7□□□□□ -0.22
VPS4A-202ENST00000562754 NCOR1P1Q9H4R4 102 aa13.7□□□□□ -0.22
VPS4A-202ENST00000562754 CHMP1AQ9HD42 196 aaPredicted RBP13.7□□□□□ -0.22
VPS4A-202ENST00000562754 RPUSD1Q9UJJ7 312 aaKnown RBP13.7□□□□□ -0.22
VPS4A-202ENST00000562754 MAP1AP78559 2803 aaPredicted RBP13.69□□□□□ -0.22
VPS4A-202ENST00000562754 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.69□□□□□ -0.222e-6■■□□□ 12.2
VPS4A-202ENST00000562754 TRBV23-1A0A0A0MS06 115 aa13.69□□□□□ -0.22
VPS4A-202ENST00000562754 MEIS3P1A6NDR6 274 aa13.69□□□□□ -0.22
VPS4A-202ENST00000562754 HEXAP06865 529 aa13.69□□□□□ -0.22
VPS4A-202ENST00000562754 PTBP1P26599 531 aaKnown RBP eCLIP13.69□□□□□ -0.22
VPS4A-202ENST00000562754 PRSS3P35030 304 aa13.69□□□□□ -0.22
VPS4A-202ENST00000562754 GLP1RP43220 463 aa13.69□□□□□ -0.22
VPS4A-202ENST00000562754 RPL31P62899 125 aaKnown RBP13.69□□□□□ -0.22
VPS4A-202ENST00000562754 PAX2Q02962 417 aa13.69□□□□□ -0.22
VPS4A-202ENST00000562754 LSAMPQ13449 338 aa13.69□□□□□ -0.22
VPS4A-202ENST00000562754 TRAPPC6BQ86SZ2 158 aa13.69□□□□□ -0.22
VPS4A-202ENST00000562754 FAM185AQ8N0U4 392 aa13.69□□□□□ -0.22
VPS4A-202ENST00000562754 OR52I2Q8NH67 350 aa13.69□□□□□ -0.22
VPS4A-202ENST00000562754 MAFIPQ8WZ33 124 aa13.69□□□□□ -0.22
VPS4A-202ENST00000562754 SRRQ9GZT4 340 aa13.69□□□□□ -0.22
VPS4A-202ENST00000562754 LPAR2Q9HBW0 351 aa13.69□□□□□ -0.22
VPS4A-202ENST00000562754 RABL2AQ9UBK7 228 aaPredicted RBP13.69□□□□□ -0.22
VPS4A-202ENST00000562754 ZNF230Q9UIE0 474 aaPredicted RBP13.69□□□□□ -0.22
VPS4A-202ENST00000562754 RABL2BQ9UNT1 228 aa13.69□□□□□ -0.22
VPS4A-202ENST00000562754 AKAP9Q99996 3911 aa13.69□□□□□ -0.22
VPS4A-202ENST00000562754 FLNAP21333 2647 aaKnown RBP13.69□□□□□ -0.22
VPS4A-202ENST00000562754 LOC105371242A0A075B767 164 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 FUOMA2VDF0 154 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 H7C1Q1 480 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 CTDSPLO15194 276 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 FOXH1O75593 365 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 ECDO95905 644 aaPredicted RBP13.68□□□□□ -0.22
VPS4A-202ENST00000562754 LPLP06858 475 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 RCC1P18754 421 aaPredicted RBP13.68□□□□□ -0.22
VPS4A-202ENST00000562754 DTYMKP23919 212 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 PITPNAQ00169 270 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 MEF2CQ06413 473 aaPredicted RBP13.68□□□□□ -0.22
VPS4A-202ENST00000562754 TMEM200BQ69YZ2 307 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 C5orf24Q7Z6I8 188 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 LY6G5BQ8NDX9 201 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 MRGPRDQ8TDS7 321 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 C15orf40Q8WUR7 153 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 SMIM4Q8WVI0 70 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 SDHCQ99643 169 aaPredicted RBP13.68□□□□□ -0.22
VPS4A-202ENST00000562754 RIMS4Q9H426 269 aaPredicted RBP13.68□□□□□ -0.22
VPS4A-202ENST00000562754 SCPEP1Q9HB40 452 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 Q9N2K0 584 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 MBNL3Q9NUK0 354 aaKnown RBP13.68□□□□□ -0.22
VPS4A-202ENST00000562754 ANAPC10Q9UM13 185 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 POLR3KQ9Y2Y1 108 aaPredicted RBP13.68□□□□□ -0.22
VPS4A-202ENST00000562754 LINC00312Q9Y6C7 94 aa13.68□□□□□ -0.22
VPS4A-202ENST00000562754 IGKV1D-8A0A087WSZ0 117 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 hADV38S2A0JD32 116 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 SULT1C2O00338 296 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 IGHV4-31P0DP07 118 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 MRPS10P82664 201 aaKnown RBP13.67□□□□□ -0.22
VPS4A-202ENST00000562754 MRPS15P82914 257 aaKnown RBP13.67□□□□□ -0.22
VPS4A-202ENST00000562754 ZNF45Q02386 682 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 TMEM249Q2WGJ8 235 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 C11orf91Q3C1V1 193 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 PYDC2Q56P42 97 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 MOB1BQ7L9L4 216 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 GVQW1Q8N7I0 195 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 SETD6Q8TBK2 473 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 S100ZQ8WXG8 99 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 OCSTAMPQ9BR26 566 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 OR6C3Q9NZP0 311 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 LPAR3Q9UBY5 353 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 TRAPPC2LQ9UL33 140 aa13.67□□□□□ -0.22
VPS4A-202ENST00000562754 WNK2Q9Y3S1 2297 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 TRGV10A0A0A0MS01 117 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 PPIAL4CA0A0B4J2A2 164 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 IGHV2-70DA0A0C4DH43 119 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 A0A1W2PQ09 198 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 GABARAPH6UMI1 98 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 GSTZ1O43708 216 aaPredicted RBP13.66□□□□□ -0.22
VPS4A-202ENST00000562754 FCER2P06734 321 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 PPIAL4GP0DN37 164 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 CGB3P0DN86 165 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 CGB7P0DN87 165 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 CCL3L1P16619 93 aa13.66□□□□□ -0.22
VPS4A-202ENST00000562754 SSTR5P35346 364 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms