RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 METTL9Q9H1A3 318 aa8.15□□□□□ -1.1
LDLR-214ENST00000560628 TMEM138Q9NPI0 162 aa8.15□□□□□ -1.1
LDLR-214ENST00000560628 BABAM2Q9NXR7 383 aa8.15□□□□□ -1.1
LDLR-214ENST00000560628 SMPD3Q9NY59 655 aaPredicted RBP8.15□□□□□ -1.1
LDLR-214ENST00000560628 IDI2-AS1Q9NZ38 188 aa8.15□□□□□ -1.1
LDLR-214ENST00000560628 PSG11Q9UQ72 335 aa8.15□□□□□ -1.1
LDLR-214ENST00000560628 ST3GAL6Q9Y274 331 aa8.15□□□□□ -1.1
LDLR-214ENST00000560628 A0A1W2PPE3 182 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 OR7C1O76099 320 aaPredicted RBP8.14□□□□□ -1.11
LDLR-214ENST00000560628 LALBAP00709 142 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 IL1AP01583 271 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 CSTBP04080 98 aaKnown RBP8.14□□□□□ -1.11
LDLR-214ENST00000560628 SNRNP70P08621 437 aaKnown RBP8.14□□□□□ -1.11
LDLR-214ENST00000560628 FAM106CPP0CH98 169 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 SERPINA2P20848 420 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 BDKRB2P30411 391 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 SSTR5P35346 364 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 ZNF93P35789 620 aaPredicted RBP8.14□□□□□ -1.11
LDLR-214ENST00000560628 PPP3R1P63098 170 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 HNF4GQ14541 408 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 DDI2Q5TDH0 399 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 CCDC144NLQ6NUI1 221 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 Q6ZPA2 131 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 OSR2Q8N2R0 312 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 DRAM1Q8N682 238 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 ZFP41Q8N8Y5 198 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 Q8NFD4 153 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 OR52N1Q8NH53 320 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 OR56B4Q8NH76 319 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 UBALD1Q8TB05 177 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 CCDC107Q8WV48 283 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 GHSRQ92847 366 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 MYDGFQ969H8 173 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 TOMM40LQ969M1 308 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 NCOR1P1Q9H4R4 102 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 ZNF281Q9Y2X9 895 aa8.14□□□□□ -1.11
LDLR-214ENST00000560628 A0A1W2PP11 408 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 A0A1W2PPK0 400 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 OOSP1A8MZH6 123 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 NPIPB11E5RHQ5 1161 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 GEMIN2O14893 280 aaKnown RBP8.13□□□□□ -1.11
LDLR-214ENST00000560628 PF4V1P10720 104 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 IGLL1P15814 213 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 MYL12AP19105 171 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 CD33P20138 364 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 RBM11P57052 281 aaKnown RBP8.13□□□□□ -1.11
LDLR-214ENST00000560628 MADCAM1Q13477 382 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 HES1Q14469 280 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 SLC22A6Q4U2R8 563 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 KHDC1LQ5JSQ8 128 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 ATAD3CQ5T2N8 411 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 FAM53AQ6NSI3 398 aaPredicted RBP8.13□□□□□ -1.11
LDLR-214ENST00000560628 THNSL2Q86YJ6 484 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 GGHQ92820 318 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 TMEM80Q96HE8 168 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 RDH12Q96NR8 316 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 S100A13Q99584 98 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 LINC00574Q9H8X3 128 aa8.13□□□□□ -1.11
LDLR-214ENST00000560628 CHCHD3Q9NX63 227 aaKnown RBP8.13□□□□□ -1.11
LDLR-214ENST00000560628 DIMT1Q9UNQ2 313 aaKnown RBP8.13□□□□□ -1.11
LDLR-214ENST00000560628 EXOSC1Q9Y3B2 195 aaKnown RBP8.13□□□□□ -1.11
LDLR-214ENST00000560628 AMMECR1Q9Y4X0 333 aaPredicted RBP8.13□□□□□ -1.11
LDLR-214ENST00000560628 TSSC4Q9Y5U2 329 aaPredicted RBP8.13□□□□□ -1.11
LDLR-214ENST00000560628 TRAV8-7A0A075B6U6 113 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 PNMA8CA0A1B0GUJ8 204 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 A0A1W2PPI3 338 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 TMEM30CPA0ZSE6 113 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 IRGMA1A4Y4 181 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 MAGEA13PA6NCF6 341 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 FAM90A18PA6NE21 464 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 FAM90A16PA6NEW6 464 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 FAM90A20PA6NIJ5 464 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 FAM90A9PA6NNJ1 464 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 FAM90A12PA8MX19 464 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 FAM90A5PA8MXJ8 464 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 FAM90A15PP0C7V4 464 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 FAM90A13PP0C7W8 464 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 FAM90A14PP0C7W9 464 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 FAM90A24PP0C7X0 464 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 TMEM11P17152 192 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 GZMHP20718 246 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 REG1BP48304 166 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 KCNJ3P48549 501 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 RIPK1Q13546 671 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 FOXB2Q5VYV0 432 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 TTC23Q5W5X9 447 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 DMKNQ6E0U4 476 aaPredicted RBP8.12□□□□□ -1.11
LDLR-214ENST00000560628 ZNF329Q86UD4 541 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 DHRSXQ8N5I4 330 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 WFDC9Q8NEX5 89 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 OR4X2Q8NGF9 303 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 OR10X1Q8NGY0 326 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 MRAPQ8TCY5 172 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 NEK7Q8TDX7 302 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 ARL11Q969Q4 196 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 PHF21AQ96BD5 680 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 SMIM19Q96E16 107 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 ZNF184Q99676 751 aaPredicted RBP8.12□□□□□ -1.11
LDLR-214ENST00000560628 PCDHB16Q9NRJ7 776 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 NECAP2Q9NVZ3 263 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms