RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 LCATP04180 440 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 CTSSP25774 331 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 H3F3AP84243 136 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 PAX5Q02548 391 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 HNF4GQ14541 408 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 SHBQ15464 509 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 GUK1Q16774 197 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 CFAP161Q6P656 301 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 OPN5Q6U736 354 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 PLXDC2Q6UX71 529 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 SMIM15Q7Z3B0 74 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 NAA60Q9H7X0 242 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 URB1O60287 2271 aaKnown RBP9.8□□□□□ -0.84
CUX1-218ENST00000560541 ELOA3CA0A087WX78 387 aaPredicted RBP9.8□□□□□ -0.84
CUX1-218ENST00000560541 IGHV5-10-1A0A0J9YXX1 117 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 C20orf202A1L168 122 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 GAPDHP04406 335 aaKnown RBP9.8□□□□□ -0.84
CUX1-218ENST00000560541 FAM185AQ8N0U4 392 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 SUMF1Q8NBK3 374 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 M1APQ8TC57 530 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 SPTSSAQ969W0 71 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 GPHA2Q96T91 129 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 SLC2A9Q9NRM0 540 aa9.8□□□□□ -0.84
CUX1-218ENST00000560541 B4GALT1P15291 398 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 SNCAP37840 140 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 ZNF133P52736 654 aaPredicted RBP9.79□□□□□ -0.84
CUX1-218ENST00000560541 TMEM187Q14656 261 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 TMEM123Q8N131 208 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 FBXL14Q8N1E6 418 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 NECAP2Q9NVZ3 263 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 IGKV1-12A0A0C4DH73 117 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 CCDC163A0A0D9SF12 145 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 E5RGE8 158 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 CCL25O15444 150 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 PHF1O43189 567 aaPredicted RBP9.79□□□□□ -0.84
CUX1-218ENST00000560541 DKK1O94907 266 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 IGKV1D-12P01611 117 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 AMBPP02760 352 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 UBE2KP61086 200 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 FAM3AP98173 230 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 FBXW12Q6X9E4 464 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 NUDT11Q96G61 164 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 ADGRG7Q96K78 797 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 DKKL1Q9UK85 242 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 NSG2Q9Y328 171 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 M0QZK8 103 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 OMGP23515 440 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 OTX1P32242 354 aaPredicted RBP9.79□□□□□ -0.84
CUX1-218ENST00000560541 ERVFC1-1P60608 527 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 ARL6IP1Q15041 203 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 DNLZQ5SXM8 178 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 C10orf128Q5T292 105 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 TMEM182Q6ZP80 229 aaPredicted RBP9.79□□□□□ -0.84
CUX1-218ENST00000560541 Q6ZVH6 145 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 SLC35E3Q7Z769 313 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 CMTM1Q8IZ96 169 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 TMEM54Q969K7 222 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 BORCS8Q96FH0 119 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 SRXN1Q9BYN0 137 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 KCNJ16Q9NPI9 418 aa9.79□□□□□ -0.84
CUX1-218ENST00000560541 C19orf25Q9UFG5 118 aaPredicted RBP9.79□□□□□ -0.84
CUX1-218ENST00000560541 A0A0J9YW62 118 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 SCGB1D1O95968 90 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 NTF4P34130 210 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 PPP1CCP36873 323 aaKnown RBP9.78□□□□□ -0.84
CUX1-218ENST00000560541 RHEBQ15382 184 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 ZNF573Q86YE8 665 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 ZIC4Q8N9L1 334 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 ZNF407Q9C0G0 2248 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 RPL36A-HNRNPH2H7BZ11 118 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 ZIC3O60481 467 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 NXPH3O95157 252 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 CST2P09228 141 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 DANCRP0C864 163 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 CHATP28329 748 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 TAGLN2P37802 199 aaKnown RBP9.78□□□□□ -0.84
CUX1-218ENST00000560541 ERVFRD-1P60508 538 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 RIPPLY2Q5TAB7 128 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 FAM213BQ8TBF2 198 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 MUCL1Q96DR8 90 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 PLEKHA2Q9HB19 425 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 LUZP4Q9P127 313 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 HSF4Q9ULV5 492 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 ST3GAL6Q9Y274 331 aa9.78□□□□□ -0.84
CUX1-218ENST00000560541 BORCS7-ASMTA0A0B4J1R7 106 aa9.77□□□□□ -0.84
CUX1-218ENST00000560541 LOC102725191A0A1B0GVB3 256 aa9.77□□□□□ -0.84
CUX1-218ENST00000560541 DFFBO76075 338 aa9.77□□□□□ -0.84
CUX1-218ENST00000560541 BRS3P32247 399 aa9.77□□□□□ -0.84
CUX1-218ENST00000560541 ECI1P42126 302 aa9.77□□□□□ -0.84
CUX1-218ENST00000560541 MRPL49Q13405 166 aaKnown RBP9.77□□□□□ -0.84
CUX1-218ENST00000560541 PCOLCEQ15113 449 aa9.77□□□□□ -0.84
CUX1-218ENST00000560541 GPR87Q9BY21 358 aa9.77□□□□□ -0.84
CUX1-218ENST00000560541 MSL2Q9HCI7 577 aa9.77□□□□□ -0.84
CUX1-218ENST00000560541 WNT16Q9UBV4 365 aa9.77□□□□□ -0.84
CUX1-218ENST00000560541 ATXN7O15265 892 aaPredicted RBP9.77□□□□□ -0.85
CUX1-218ENST00000560541 ONECUT2O95948 504 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 ZNF32P17041 273 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 ZNF468Q5VIY5 522 aaPredicted RBP9.77□□□□□ -0.85
CUX1-218ENST00000560541 Q6ZPA2 131 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 LIAT1Q6ZQX7 453 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms