RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 METTL21EPA6NDL7 271 aa17.79■□□□□ 0.44
SNX1-206ENST00000559389 C17orf98A8MV24 154 aa17.79■□□□□ 0.44
SNX1-206ENST00000559389 RAB27BO00194 218 aa17.79■□□□□ 0.44
SNX1-206ENST00000559389 CA11O75493 328 aa17.79■□□□□ 0.44
SNX1-206ENST00000559389 RBP4P02753 201 aa17.79■□□□□ 0.44
SNX1-206ENST00000559389 GLP1RP43220 463 aa17.79■□□□□ 0.44
SNX1-206ENST00000559389 MOGAT2Q3SYC2 334 aa17.79■□□□□ 0.44
SNX1-206ENST00000559389 KLF17Q5JT82 389 aaPredicted RBP17.79■□□□□ 0.44
SNX1-206ENST00000559389 VMO1Q7Z5L0 202 aa17.79■□□□□ 0.44
SNX1-206ENST00000559389 TRAPPC6BQ86SZ2 158 aa17.79■□□□□ 0.44
SNX1-206ENST00000559389 DYRK2Q92630 601 aa17.79■□□□□ 0.44
SNX1-206ENST00000559389 METTL8Q9H825 291 aaKnown RBP17.79■□□□□ 0.44
SNX1-206ENST00000559389 UNKLQ9H9P5 680 aaKnown RBP17.79■□□□□ 0.44
SNX1-206ENST00000559389 TAS2R3Q9NYW6 316 aa17.79■□□□□ 0.44
SNX1-206ENST00000559389 CRLF1O75462 422 aa17.78■□□□□ 0.44
SNX1-206ENST00000559389 RORCP51449 518 aa17.78■□□□□ 0.44
SNX1-206ENST00000559389 TMEM50BP56557 158 aa17.78■□□□□ 0.44
SNX1-206ENST00000559389 DYNC1I2Q13409 638 aaKnown RBP17.78■□□□□ 0.44
SNX1-206ENST00000559389 PLAC9Q5JTB6 97 aa17.78■□□□□ 0.44
SNX1-206ENST00000559389 OR13A1Q8NGR1 328 aa17.78■□□□□ 0.44
SNX1-206ENST00000559389 OR10R2Q8NGX6 335 aa17.78■□□□□ 0.44
SNX1-206ENST00000559389 NANPQ8TBE9 248 aa17.78■□□□□ 0.44
SNX1-206ENST00000559389 ARHGAP5-AS1Q96IT6 56 aa17.78■□□□□ 0.44
SNX1-206ENST00000559389 FAAP24Q9BTP7 215 aa17.78■□□□□ 0.44
SNX1-206ENST00000559389 PECRQ9BY49 303 aa17.78■□□□□ 0.44
SNX1-206ENST00000559389 ATG5Q9H1Y0 275 aa17.78■□□□□ 0.44
SNX1-206ENST00000559389 GAL3ST2Q9H3Q3 398 aa17.78■□□□□ 0.44
SNX1-206ENST00000559389 SIRT7Q9NRC8 400 aa17.78■□□□□ 0.44
SNX1-206ENST00000559389 PLEKHJ1Q9NW61 149 aa17.78■□□□□ 0.44
SNX1-206ENST00000559389 WNK2Q9Y3S1 2297 aa17.77■□□□□ 0.44
SNX1-206ENST00000559389 MT-ND4P03905 459 aa17.77■□□□□ 0.44
SNX1-206ENST00000559389 PRTN3P24158 256 aa17.77■□□□□ 0.44
SNX1-206ENST00000559389 CHRFAM7AQ494W8 412 aa17.77■□□□□ 0.44
SNX1-206ENST00000559389 TNFRSF14Q92956 283 aa17.77■□□□□ 0.44
SNX1-206ENST00000559389 RAB3CQ96E17 227 aa17.77■□□□□ 0.44
SNX1-206ENST00000559389 BEX2Q9BXY8 128 aa17.77■□□□□ 0.44
SNX1-206ENST00000559389 hCG_1809904A0A1W2PP81 198 aa17.76■□□□□ 0.43
SNX1-206ENST00000559389 A0A1W2PPE2 198 aa17.76■□□□□ 0.43
SNX1-206ENST00000559389 A0A1W2PR64 198 aa17.76■□□□□ 0.43
SNX1-206ENST00000559389 A0A1W2PRV1 198 aa17.76■□□□□ 0.43
SNX1-206ENST00000559389 ZNF729A6NN14 1252 aaPredicted RBP17.76■□□□□ 0.43
SNX1-206ENST00000559389 MFNGO00587 321 aa17.76■□□□□ 0.43
SNX1-206ENST00000559389 CLPXO76031 633 aa17.76■□□□□ 0.43
SNX1-206ENST00000559389 SCGNO76038 276 aa17.76■□□□□ 0.43
SNX1-206ENST00000559389 CGB3P0DN86 165 aa17.76■□□□□ 0.43
SNX1-206ENST00000559389 CGB7P0DN87 165 aa17.76■□□□□ 0.43
SNX1-206ENST00000559389 HOXB4P17483 251 aaPredicted RBP17.76■□□□□ 0.43
SNX1-206ENST00000559389 SRP14P37108 136 aaKnown RBP17.76■□□□□ 0.43
SNX1-206ENST00000559389 DLX1P56177 255 aa17.76■□□□□ 0.43
SNX1-206ENST00000559389 Q6ZTK2 550 aa17.76■□□□□ 0.43
SNX1-206ENST00000559389 DYNC2LI1Q8TCX1 351 aa17.76■□□□□ 0.43
SNX1-206ENST00000559389 MRGPRDQ8TDS7 321 aa17.76■□□□□ 0.43
SNX1-206ENST00000559389 FN1P02751 2386 aaKnown RBP17.76■□□□□ 0.43
SNX1-206ENST00000559389 TRAV39A0A0B4J263 110 aa17.75■□□□□ 0.43
SNX1-206ENST00000559389 IGHV4-38-2P0DP08 117 aa17.75■□□□□ 0.43
SNX1-206ENST00000559389 HIST1H1DP16402 221 aaKnown RBP17.75■□□□□ 0.43
SNX1-206ENST00000559389 ZNF182P17025 639 aaPredicted RBP17.75■□□□□ 0.43
SNX1-206ENST00000559389 ERVFRD-1P60508 538 aa17.75■□□□□ 0.43
SNX1-206ENST00000559389 C17orf58Q2M2W7 97 aa17.75■□□□□ 0.43
SNX1-206ENST00000559389 NCR3LG1Q68D85 454 aa17.75■□□□□ 0.43
SNX1-206ENST00000559389 OR4K15Q8NH41 348 aa17.75■□□□□ 0.43
SNX1-206ENST00000559389 MRPL30Q8TCC3 161 aaKnown RBP17.75■□□□□ 0.43
SNX1-206ENST00000559389 ACOT12Q8WYK0 555 aa17.75■□□□□ 0.43
SNX1-206ENST00000559389 AP3S1Q92572 193 aa17.75■□□□□ 0.43
SNX1-206ENST00000559389 CALYQ9NYX4 217 aa17.75■□□□□ 0.43
SNX1-206ENST00000559389 CCDC59Q9P031 241 aaKnown RBP17.75■□□□□ 0.43
SNX1-206ENST00000559389 RSL24D1Q9UHA3 163 aaKnown RBP17.75■□□□□ 0.43
SNX1-206ENST00000559389 AK3Q9UIJ7 227 aa17.75■□□□□ 0.43
SNX1-206ENST00000559389 KCNK7Q9Y2U2 307 aa17.75■□□□□ 0.43
SNX1-206ENST00000559389 KBTBD11-OT1A0A1B0GTJ5 212 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 CCDC160A6NGH7 325 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 RNASEK-C17orf49H0YIS7 233 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 ZNF701M0R085 212 aaPredicted RBP17.74■□□□□ 0.43
SNX1-206ENST00000559389 NAPSAO96009 420 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 IGHV1-8P0DP01 117 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 SRD5A1P18405 259 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 SSTR5P35346 364 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 PRB3Q04118 309 aaPredicted RBP17.74■□□□□ 0.43
SNX1-206ENST00000559389 KLRD1Q13241 179 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 UBE2NLQ5JXB2 153 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 GPR157Q5UAW9 335 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 OLFML2AQ68BL7 652 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 HCP5Q6MZN7 132 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 ZNF782Q6ZMW2 699 aaPredicted RBP17.74■□□□□ 0.43
SNX1-206ENST00000559389 SAMD12Q8N8I0 201 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 ZNF565Q8N9K5 539 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 LHX4Q969G2 390 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 ABCG5Q9H222 651 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 LINC00574Q9H8X3 128 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 C12orf4Q9NQ89 552 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.74■□□□□ 0.43
SNX1-206ENST00000559389 MBNL3Q9NUK0 354 aaKnown RBP17.74■□□□□ 0.43
SNX1-206ENST00000559389 NUP50Q9UKX7 468 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 TRAPPC2LQ9UL33 140 aa17.74■□□□□ 0.43
SNX1-206ENST00000559389 NSD1Q96L73 2696 aaPredicted RBP17.74■□□□□ 0.43
SNX1-206ENST00000559389 IGHV3OR16-10A0A075B7F0 116 aa17.73■□□□□ 0.43
SNX1-206ENST00000559389 A0A0A6YYH2 397 aa17.73■□□□□ 0.43
SNX1-206ENST00000559389 CENPVL3A0A0U1RRI6 287 aa17.73■□□□□ 0.43
SNX1-206ENST00000559389 SMIM31A0A1B0GVY4 71 aa17.73■□□□□ 0.43
SNX1-206ENST00000559389 A6NJ64 397 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms