RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 LHFPL2Q6ZUX7 228 aa9.95□□□□□ -0.82
SHMT2-223ENST00000556689 SSX6Q7RTT6 188 aa9.95□□□□□ -0.82
SHMT2-223ENST00000556689 ZNF565Q8N9K5 539 aa9.95□□□□□ -0.82
SHMT2-223ENST00000556689 OR8U1Q8NH10 309 aa9.95□□□□□ -0.82
SHMT2-223ENST00000556689 GON7Q9BXV9 100 aa9.95□□□□□ -0.82
SHMT2-223ENST00000556689 WARS2Q9UGM6 360 aaKnown RBP9.95□□□□□ -0.82
SHMT2-223ENST00000556689 MYRFQ9Y2G1 1151 aa9.95□□□□□ -0.82
SHMT2-223ENST00000556689 LRRC42Q9Y546 428 aa9.95□□□□□ -0.82
SHMT2-223ENST00000556689 HUWE1Q7Z6Z7 4374 aaKnown RBP9.95□□□□□ -0.82
SHMT2-223ENST00000556689 A0A1W2PPI3 338 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 EFCAB10A6NFE3 127 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 M0R129 80 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 DEGS1O15121 323 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 SULT1C4O75897 302 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 OR2T7P0C7T2 308 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 LYL1P12980 280 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 MYL12AP19105 171 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 EFNB1P98172 346 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 MADCAM1Q13477 382 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 CXorf66Q5JRM2 361 aaPredicted RBP9.94□□□□□ -0.82
SHMT2-223ENST00000556689 SLC25A30Q5SVS4 291 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 RDH10Q8IZV5 341 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 OR8H3Q8N146 312 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 CHST4Q8NCG5 386 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 CNIH3Q8TBE1 160 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 HAVCR2Q8TDQ0 301 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 FGGYQ96C11 551 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 ADAT3Q96EY9 351 aaPredicted RBP9.94□□□□□ -0.82
SHMT2-223ENST00000556689 COQ2Q96H96 371 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 KIRREL1Q96J84 757 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 NR1H4Q96RI1 486 aaPredicted RBP9.94□□□□□ -0.82
SHMT2-223ENST00000556689 TBX5Q99593 518 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 COMMD4Q9H0A8 199 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 RHOFQ9HBH0 211 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 VCX3AQ9NNX9 186 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 PSG11Q9UQ72 335 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 SIRT4Q9Y6E7 314 aaPredicted RBP9.94□□□□□ -0.82
SHMT2-223ENST00000556689 SMAD5-AS1Q9Y6J3 95 aa9.94□□□□□ -0.82
SHMT2-223ENST00000556689 EPPK1P58107 5090 aaKnown RBP9.94□□□□□ -0.82
SHMT2-223ENST00000556689 DYNC2H1Q8NCM8 4307 aaKnown RBP9.93□□□□□ -0.82
SHMT2-223ENST00000556689 TENM2Q9NT68 2774 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 IGKV1-12A0A0C4DH73 117 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 A0A1W2PQL4 384 aaPredicted RBP9.93□□□□□ -0.82
SHMT2-223ENST00000556689 NCBP2LA6PVI3 153 aaKnown RBP9.93□□□□□ -0.82
SHMT2-223ENST00000556689 AP4M1O00189 453 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 SLC33A1O00400 549 aaPredicted RBP9.93□□□□□ -0.82
SHMT2-223ENST00000556689 KDM4BO94953 1096 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 FADS2O95864 444 aaKnown RBP9.93□□□□□ -0.82
SHMT2-223ENST00000556689 IGKV1D-33P01593 117 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 IGKV1-33P01594 117 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 IGKV1D-12P01611 117 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 IGHV3-7P01780 117 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 OCM2P0CE71 109 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 OCMP0CE72 109 aaPredicted RBP9.93□□□□□ -0.82
SHMT2-223ENST00000556689 UBCP0CG48 685 aaKnown RBP9.93□□□□□ -0.82
SHMT2-223ENST00000556689 CGB3P0DN86 165 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 CGB7P0DN87 165 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 C21orf33P30042 268 aaPredicted RBP9.93□□□□□ -0.82
SHMT2-223ENST00000556689 HTR1FP30939 366 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 ISL1P61371 349 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 FOXE3Q13461 319 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 GPR50Q13585 617 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 DIAPH2-AS1Q14236 149 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 DEFB136Q30KP8 78 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 ZNF260Q3ZCT1 412 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 Q6P435 159 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 UTS2BQ765I0 119 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 PRSS35Q8N3Z0 413 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 STX19Q8N4C7 294 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 BPIFB6Q8NFQ5 453 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 RHOXF1Q8NHV9 184 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 LEAP2Q969E1 77 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 RFT1Q96AA3 541 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 SPSB1Q96BD6 273 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 RCHY1Q96PM5 261 aa9.93□□□□□ -0.82
SHMT2-223ENST00000556689 YTHDF1Q9BYJ9 559 aaKnown RBP9.93□□□□□ -0.82
SHMT2-223ENST00000556689 CHCHD3Q9NX63 227 aaKnown RBP9.93□□□□□ -0.82
SHMT2-223ENST00000556689 ZNF256Q9Y2P7 627 aaPredicted RBP9.93□□□□□ -0.82
SHMT2-223ENST00000556689 BIRC6Q9NR09 4857 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 LOC107986453A0A1B0GWG9 222 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 LY86O95711 162 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 ELANEP08246 267 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 DBTP11182 482 aaKnown RBP9.92□□□□□ -0.82
SHMT2-223ENST00000556689 ZNF20P17024 532 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 GABARAPL2P60520 117 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 RAB40BQ12829 278 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 ATXN7L3Q14CW9 347 aaPredicted RBP9.92□□□□□ -0.82
SHMT2-223ENST00000556689 C6orf141Q5SZD1 244 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 TMEM244Q5VVB8 128 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 TGIF2LXQ8IUE1 241 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 SBSPONQ8IVN8 264 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 OR10X1Q8NGY0 326 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 OPALINQ96PE5 141 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 ABCG5Q9H222 651 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 PPIL3Q9H2H8 161 aaKnown RBP9.92□□□□□ -0.82
SHMT2-223ENST00000556689 CALYQ9NYX4 217 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 IDI2-AS1Q9NZ38 188 aa9.92□□□□□ -0.82
SHMT2-223ENST00000556689 CNOT2Q9NZN8 540 aaKnown RBP9.92□□□□□ -0.82
SHMT2-223ENST00000556689 KIAA2026Q5HYC2 2103 aa9.91□□□□□ -0.82
SHMT2-223ENST00000556689 CCRL2O00421 344 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms