RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PTPRQQ9UMZ3 2332 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 IGHV3-64DA0A0J9YX35 117 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 A6NLC8 198 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 HAND1O96004 215 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 S100A1P23297 94 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 LRRC37A5PQ49AS3 106 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 PRAMEF6Q5VXH4 476 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 ZNF497Q6ZNH5 498 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 SSX8Q7RTT4 187 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 CABLES2Q9BTV7 478 aa22.26■■□□□ 1.15
CCDC88C-205ENST00000553403 C16orf97H3BN30 126 aa22.25■■□□□ 1.15
CCDC88C-205ENST00000553403 BET1O15155 118 aa22.25■■□□□ 1.15
CCDC88C-205ENST00000553403 RP2O75695 350 aa22.25■■□□□ 1.15
CCDC88C-205ENST00000553403 OR2F2O95006 317 aa22.25■■□□□ 1.15
CCDC88C-205ENST00000553403 PTBP3O95758 552 aaKnown RBP22.25■■□□□ 1.15
CCDC88C-205ENST00000553403 LMO1P25800 156 aa22.25■■□□□ 1.15
CCDC88C-205ENST00000553403 CCKARP32238 428 aa22.25■■□□□ 1.15
CCDC88C-205ENST00000553403 OR2F1Q13607 317 aa22.25■■□□□ 1.15
CCDC88C-205ENST00000553403 EXOSC2Q13868 293 aaKnown RBP22.25■■□□□ 1.15
CCDC88C-205ENST00000553403 ZNF345Q14585 488 aa22.25■■□□□ 1.15
CCDC88C-205ENST00000553403 ZNF826PQ6ZT77 177 aa22.25■■□□□ 1.15
CCDC88C-205ENST00000553403 UBQLN2Q9UHD9 624 aa22.25■■□□□ 1.15
CCDC88C-205ENST00000553403 MAB21L2Q9Y586 359 aa22.25■■□□□ 1.15
CCDC88C-205ENST00000553403 IGKV1-6A0A0C4DH72 117 aa22.24■■□□□ 1.15
CCDC88C-205ENST00000553403 KLF3P57682 345 aaPredicted RBP22.24■■□□□ 1.15
CCDC88C-205ENST00000553403 TMEM187Q14656 261 aa22.24■■□□□ 1.15
CCDC88C-205ENST00000553403 ACP7Q6ZNF0 438 aa22.24■■□□□ 1.15
CCDC88C-205ENST00000553403 PRR7Q8TB68 274 aa22.24■■□□□ 1.15
CCDC88C-205ENST00000553403 PLPPR1Q8TBJ4 325 aa22.24■■□□□ 1.15
CCDC88C-205ENST00000553403 BBC3Q96PG8 261 aaPredicted RBP22.24■■□□□ 1.15
CCDC88C-205ENST00000553403 DUSP13Q9UII6 198 aa22.24■■□□□ 1.15
CCDC88C-205ENST00000553403 IGSF10Q6WRI0 2623 aa22.24■■□□□ 1.15
CCDC88C-205ENST00000553403 IGLV3-9A0A075B6K5 115 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 KCNJ3P48549 501 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 RND3P61587 244 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 PHLDA2Q53GA4 152 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 LRP11Q86VZ4 500 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 KCNRGQ8N5I3 272 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 LRTM2Q8N967 370 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 RELL2Q8NC24 303 aaPredicted RBP22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 TMEM171Q8WVE6 324 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 MEMO1Q9Y316 297 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 TRBV6-7A0A0A0MS04 114 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 ATXN7O15265 892 aaPredicted RBP22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 CFDP00746 253 aaPredicted RBP22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 HOXB5P09067 269 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 CD40P25942 277 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 PCSK4Q6UW60 755 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 OR2Z1Q8NG97 314 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 OR10Z1Q8NGY1 313 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 OR10C1Q96KK4 312 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 WIPI2Q9Y4P8 454 aa22.23■■□□□ 1.15
CCDC88C-205ENST00000553403 NPIPB11E5RHQ5 1161 aa22.22■■□□□ 1.15
CCDC88C-205ENST00000553403 IFNA21P01568 189 aa22.22■■□□□ 1.15
CCDC88C-205ENST00000553403 RCC1P18754 421 aaPredicted RBP22.22■■□□□ 1.15
CCDC88C-205ENST00000553403 IL15RAQ13261 267 aa22.22■■□□□ 1.15
CCDC88C-205ENST00000553403 ACOT7LQ6ZUV0 252 aa22.22■■□□□ 1.15
CCDC88C-205ENST00000553403 C5orf24Q7Z6I8 188 aa22.22■■□□□ 1.15
CCDC88C-205ENST00000553403 ZNF565Q8N9K5 539 aa22.22■■□□□ 1.15
CCDC88C-205ENST00000553403 TAAR3PQ9P1P4 343 aa22.22■■□□□ 1.15
CCDC88C-205ENST00000553403 MBD2Q9UBB5 411 aa22.22■■□□□ 1.15
CCDC88C-205ENST00000553403 SH3BGRL2Q9UJC5 107 aa22.22■■□□□ 1.15
CCDC88C-205ENST00000553403 MPTX1A8MV57 137 aa22.21■■□□□ 1.15
CCDC88C-205ENST00000553403 ATP6V1G2-DDX39BF2Z307 99 aa22.21■■□□□ 1.15
CCDC88C-205ENST00000553403 WNT9BO14905 357 aa22.21■■□□□ 1.15
CCDC88C-205ENST00000553403 OR5AC1P0C628 307 aa22.21■■□□□ 1.15
CCDC88C-205ENST00000553403 GNRHRP30968 328 aa22.21■■□□□ 1.15
CCDC88C-205ENST00000553403 SMIM21Q3B7S5 101 aa22.21■■□□□ 1.15
CCDC88C-205ENST00000553403 MBNL3Q9NUK0 354 aaKnown RBP22.21■■□□□ 1.15
CCDC88C-205ENST00000553403 UFSP2Q9NUQ7 469 aa22.21■■□□□ 1.15
CCDC88C-205ENST00000553403 OR14J1Q9UGF5 321 aa22.21■■□□□ 1.15
CCDC88C-205ENST00000553403 IFNL4K9M1U5 179 aa22.2■■□□□ 1.15
CCDC88C-205ENST00000553403 ERVH48-1M5A8F1 160 aa22.2■■□□□ 1.15
CCDC88C-205ENST00000553403 LYL1P12980 280 aa22.2■■□□□ 1.15
CCDC88C-205ENST00000553403 LIAT1Q6ZQX7 453 aa22.2■■□□□ 1.15
CCDC88C-205ENST00000553403 C22orf34Q6ZV56 151 aa22.2■■□□□ 1.15
CCDC88C-205ENST00000553403 SLC51BQ86UW2 128 aa22.2■■□□□ 1.15
CCDC88C-205ENST00000553403 LDLRAD3Q86YD5 345 aa22.2■■□□□ 1.15
CCDC88C-205ENST00000553403 TRAPPC2LQ9UL33 140 aa22.2■■□□□ 1.15
CCDC88C-205ENST00000553403 PRR14LQ5THK1 2151 aa22.2■■□□□ 1.15
CCDC88C-205ENST00000553403 hCG_1807616A0A1W2PRN6 198 aa22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 ZSCAN5BA6NJL1 495 aa22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 GPR31O00270 319 aa22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 MPPED1O15442 326 aa22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 CFHR2P36980 270 aa22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 SELENOVP59797 346 aa22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 H1FOOQ8IZA3 346 aaPredicted RBP22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 LGI3Q8N145 548 aa22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 OR8H3Q8N146 312 aa22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 NUP37Q8NFH4 326 aa22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 OR11L1Q8NGX0 322 aa22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 OR10J5Q8NHC4 309 aa22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 RND1Q92730 232 aa22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 VKORC1Q9BQB6 163 aa22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 RNF126Q9BV68 326 aa22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 SLC5A7Q9GZV3 580 aa22.2■■□□□ 1.14
CCDC88C-205ENST00000553403 RNF222A6NCQ9 220 aa22.19■■□□□ 1.14
CCDC88C-205ENST00000553403 PTAFRP25105 342 aa22.19■■□□□ 1.14
CCDC88C-205ENST00000553403 TMEM108Q6UXF1 575 aa22.19■■□□□ 1.14
CCDC88C-205ENST00000553403 INO80EQ8NBZ0 244 aaPredicted RBP22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms