RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 IGHV3-43A0A0B4J1X8 118 aa2.85□□□□□ -1.95
SCFD1-209ENST00000553280 FSTL3O95633 263 aa2.85□□□□□ -1.95
SCFD1-209ENST00000553280 GDI2P50395 445 aaKnown RBP2.85□□□□□ -1.95
SCFD1-209ENST00000553280 MED21Q13503 144 aa2.85□□□□□ -1.95
SCFD1-209ENST00000553280 ENDOGQ14249 297 aaKnown RBP2.85□□□□□ -1.95
SCFD1-209ENST00000553280 TMEM69Q5SWH9 247 aa2.85□□□□□ -1.95
SCFD1-209ENST00000553280 TTC33Q6PID6 262 aaPredicted RBP2.85□□□□□ -1.95
SCFD1-209ENST00000553280 DRAM2Q6UX65 266 aa2.85□□□□□ -1.95
SCFD1-209ENST00000553280 TMEM144Q7Z5S9 345 aa2.85□□□□□ -1.95
SCFD1-209ENST00000553280 MTERF4Q7Z6M4 381 aaKnown RBP2.85□□□□□ -1.95
SCFD1-209ENST00000553280 AMN1Q8IY45 258 aa2.85□□□□□ -1.95
SCFD1-209ENST00000553280 OR52E4Q8NGH9 312 aa2.85□□□□□ -1.95
SCFD1-209ENST00000553280 DNAJB3Q8WWF6 145 aa2.85□□□□□ -1.95
SCFD1-209ENST00000553280 RMI2Q96E14 147 aa2.85□□□□□ -1.95
SCFD1-209ENST00000553280 ZNF2Q9BSG1 426 aaPredicted RBP2.85□□□□□ -1.95
SCFD1-209ENST00000553280 SCRT1Q9BWW7 348 aa2.85□□□□□ -1.95
SCFD1-209ENST00000553280 DRC3Q9H069 523 aa2.85□□□□□ -1.95
SCFD1-209ENST00000553280 VSIRQ9H7M9 311 aa2.85□□□□□ -1.95
SCFD1-209ENST00000553280 BTRCQ9Y297 605 aa2.85□□□□□ -1.95
SCFD1-209ENST00000553280 ARAP3Q8WWN8 1544 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 VWA8A3KMH1 1905 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 GOLGA8KD6RF30 607 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 GOLGA8MH3BSY2 632 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 RTL8CO15255 209 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 COCHO43405 550 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 ATP8B1O43520 1251 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 HPGDSO60760 199 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 NIPSNAP2O75323 286 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 POP7O75817 140 aaKnown RBP2.84□□□□□ -1.95
SCFD1-209ENST00000553280 ATP6V1G2O95670 118 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 MLNP12872 115 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 HIST1H1CP16403 213 aaKnown RBP2.84□□□□□ -1.95
SCFD1-209ENST00000553280 ACTR1BP42025 376 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 HSPA13P48723 471 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 DYNLL1P63167 89 aaKnown RBP2.84□□□□□ -1.95
SCFD1-209ENST00000553280 SKP2Q13309 424 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 FAM53BQ14153 422 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 LY6EQ16553 131 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 TBC1D28Q2M2D7 210 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 ELP2Q6IA86 826 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 SPINT4Q6UDR6 99 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 FAM151BQ6UXP7 276 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 FAM19A3Q7Z5A8 133 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 SGPP2Q8IWX5 399 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 RNF182Q8N6D2 247 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 STOML3Q8TAV4 291 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2.84□□□□□ -1.95
SCFD1-209ENST00000553280 RBPMSQ93062 196 aaKnown RBP2.84□□□□□ -1.95
SCFD1-209ENST00000553280 RBP7Q96R05 134 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 SHANK2-AS3Q9BTD1 123 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 CHST5Q9GZS9 411 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 PLEKHJ1Q9NW61 149 aa2.84□□□□□ -1.95
SCFD1-209ENST00000553280 MARCOQ9UEW3 520 aaPredicted RBP2.84□□□□□ -1.95
SCFD1-209ENST00000553280 IGHV1-45A0A0A0MS14 117 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 IGHV3-21A0A0B4J1V1 117 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 F5H5P2 479 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 K7ERS5 55 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 CCRL2O00421 344 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 SOX14O95416 240 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 INPP1P49441 399 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 MP68P56378 58 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 CLDN12P56749 244 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 RBX1P62877 108 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 CLEC12BQ2HXU8 276 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 LRRC26Q2I0M4 334 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 KRTAP13-2Q52LG2 175 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 ZFP82Q8N141 532 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 SMIM12Q96EX1 92 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 METTL9Q9H1A3 318 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 CLUHO75153 1309 aa2.83□□□□□ -1.96
SCFD1-209ENST00000553280 BAZ1BQ9UIG0 1483 aaKnown RBP2.83□□□□□ -1.96
SCFD1-209ENST00000553280 DYSFO75923 2080 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 LEUTXA8MZ59 168 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 IGHG2P01859 326 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 PFN1P07737 140 aaKnown RBP2.82□□□□□ -1.96
SCFD1-209ENST00000553280 GABRA1P14867 456 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 GRPRP30550 384 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 GTF2BQ00403 316 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 ZFAND6Q6FIF0 208 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 IGFL1Q6UW32 110 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 SPNS3Q6ZMD2 512 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 VN1R4Q7Z5H5 301 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 MAL2Q969L2 176 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 TAMM41Q96BW9 452 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 REEP6Q96HR9 211 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 PYURFQ96I23 114 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 SEC22CQ9BRL7 303 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 PLA2G12AQ9BZM1 189 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 TXNIPQ9H3M7 391 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 MTCH2Q9Y6C9 303 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 SVILO95425 2214 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 RIMS2Q9UQ26 1411 aa2.82□□□□□ -1.96
SCFD1-209ENST00000553280 PLXNB3Q9ULL4 1909 aa2.81□□□□□ -1.96
SCFD1-209ENST00000553280 IGKV1OR2-108A0A075B7D4 117 aa2.81□□□□□ -1.96
SCFD1-209ENST00000553280 DAPL1A0PJW8 107 aa2.81□□□□□ -1.96
SCFD1-209ENST00000553280 OR6C70A6NIJ9 312 aa2.81□□□□□ -1.96
SCFD1-209ENST00000553280 E2F6O75461 281 aa2.81□□□□□ -1.96
SCFD1-209ENST00000553280 CGB3P0DN86 165 aa2.81□□□□□ -1.96
SCFD1-209ENST00000553280 CGB7P0DN87 165 aa2.81□□□□□ -1.96
SCFD1-209ENST00000553280 CELP19835 753 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms