RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CALHM2Q9HA72 323 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 Q9N2K0 584 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 KCNJ16Q9NPI9 418 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 TCFL5Q9UL49 500 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 NOSIPQ9Y314 301 aaKnown RBP6.42□□□□□ -1.38
LIMA1-213ENST00000552720 USF3Q68DE3 2245 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 TRAV39A0A0B4J263 110 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 A0A0G2JRQ6 117 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF727A8MUV8 499 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 MRPL33O75394 65 aaKnown RBP6.42□□□□□ -1.38
LIMA1-213ENST00000552720 MT-ND4LP03901 98 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 IFNA4P05014 189 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF14P17017 642 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-213ENST00000552720 AGAP20933 346 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 PAX6P26367 422 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 DYNLT3P51808 116 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 PCBD1P61457 104 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 FABP9Q0Z7S8 132 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 FOXO1Q12778 655 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF154Q13106 437 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 C3AR1Q16581 482 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 RIPPLY2Q5TAB7 128 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 C17orf78Q8N4C9 275 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 PLPPR1Q8TBJ4 325 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 PSMF1Q92530 271 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 SIGLEC12Q96PQ1 595 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 SLC35B3Q9H1N7 401 aa6.42□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF732B4DXR9 585 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 HS3ST1O14792 307 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 CDS2O95674 445 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 NAPSAO96009 420 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 S100A6P06703 90 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 NQO2P16083 231 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 RAB5AP20339 215 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 PLA2G5P39877 138 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 CYB561P49447 251 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 B2MP61769 119 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 HMGN3Q15651 99 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 COLCA1Q6ZS62 124 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 VASH2Q86V25 355 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF565Q8N9K5 539 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 UBALD1Q8TB05 177 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 CT55Q8WUE5 264 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 TMEM56Q96MV1 263 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 PRDM14Q9GZV8 571 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 IFT22Q9H7X7 185 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 LYRM2Q9NU23 88 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-213ENST00000552720 LRFN1Q9P244 771 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF391Q9UJN7 358 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 STRAPQ9Y3F4 350 aaKnown RBP6.41□□□□□ -1.38
LIMA1-213ENST00000552720 LIPGQ9Y5X9 500 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 TMEM56-RWDD3S4R434 201 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 ARGFXA6NJG6 315 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 FAM166BA8MTA8 275 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 UBE2CO00762 179 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 CHST1O43916 411 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 TK1P04183 234 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 FGF12P61328 243 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 RPS23P62266 143 aaKnown RBP6.41□□□□□ -1.38
LIMA1-213ENST00000552720 ZXDAP98168 799 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 NMSQ5H8A3 153 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF343Q6P1L6 599 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 COMMD1Q8N668 190 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 RDH5Q92781 318 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 CPNE4Q96A23 557 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-213ENST00000552720 TAAR3PQ9P1P4 343 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 TECTAO75443 2155 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 BDP1A6H8Y1 2624 aa6.41□□□□□ -1.38
LIMA1-213ENST00000552720 RBFOX3A6NFN3 312 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 H0YL77 283 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 PITX3O75364 302 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 OR8U8P0C7N1 319 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF806P0C7X5 589 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 RAB5CP51148 216 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 PAX9P55771 341 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 RND3P61587 244 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 VAMP2P63027 116 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 RNF212Q495C1 297 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 SOHLH1Q5JUK2 328 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 NCMAPQ5T1S8 102 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 TCEAL6Q6IPX3 200 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 PCSK4Q6UW60 755 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 MRPL21Q7Z2W9 205 aaKnown RBP6.4□□□□□ -1.38
LIMA1-213ENST00000552720 P4HA3Q7Z4N8 544 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 ZDHHC23Q8IYP9 409 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 ZNF561Q8N587 486 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 SUMF2Q8NBJ7 301 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 OR51H1Q8NH63 302 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 TCEAL3Q969E4 200 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 THOC3Q96J01 351 aaKnown RBP6.4□□□□□ -1.38
LIMA1-213ENST00000552720 TAAR9Q96RI9 348 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 PLEKHF2Q9H8W4 249 aa6.4□□□□□ -1.38
LIMA1-213ENST00000552720 IGHV3-64DA0A0J9YX35 117 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 PRSS44E7EML9 344 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 RHBDL1O75783 438 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 NEURL1O76050 574 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 MAGEA5P43359 124 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 LHX2P50458 406 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 TMEM267Q0VDI3 215 aaPredicted RBP6.4□□□□□ -1.39
LIMA1-213ENST00000552720 TRA2AQ13595 282 aaKnown RBP eCLIP6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms