RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 FAHD2AQ96GK7 314 aa17.46■□□□□ 0.39
VPS29-206ENST00000549578 C6orf62Q9GZU0 229 aaPredicted RBP17.46■□□□□ 0.39
VPS29-206ENST00000549578 GSX1Q9H4S2 264 aaPredicted RBP17.46■□□□□ 0.39
VPS29-206ENST00000549578 KIAA2026Q5HYC2 2103 aa17.45■□□□□ 0.38
VPS29-206ENST00000549578 MFNGO00587 321 aa17.45■□□□□ 0.38
VPS29-206ENST00000549578 RGS5O15539 181 aa17.45■□□□□ 0.38
VPS29-206ENST00000549578 APOA1P02647 267 aa17.45■□□□□ 0.38
VPS29-206ENST00000549578 MT-ND4P03905 459 aa17.45■□□□□ 0.38
VPS29-206ENST00000549578 ELK1P19419 428 aa17.45■□□□□ 0.38
VPS29-206ENST00000549578 ARF6P62330 175 aa17.45■□□□□ 0.38
VPS29-206ENST00000549578 CLEC9AQ6UXN8 241 aa17.45■□□□□ 0.38
VPS29-206ENST00000549578 TRAPPC6BQ86SZ2 158 aa17.45■□□□□ 0.38
VPS29-206ENST00000549578 OR4K15Q8NH41 348 aa17.45■□□□□ 0.38
VPS29-206ENST00000549578 CCDC107Q8WV48 283 aa17.45■□□□□ 0.38
VPS29-206ENST00000549578 S100A16Q96FQ6 103 aaKnown RBP17.45■□□□□ 0.38
VPS29-206ENST00000549578 HDHD3Q9BSH5 251 aaPredicted RBP17.45■□□□□ 0.38
VPS29-206ENST00000549578 LPAR3Q9UBY5 353 aa17.45■□□□□ 0.38
VPS29-206ENST00000549578 ELF5Q9UKW6 265 aaPredicted RBP17.45■□□□□ 0.38
VPS29-206ENST00000549578 LINC00312Q9Y6C7 94 aa17.45■□□□□ 0.38
VPS29-206ENST00000549578 TRAV18A0A075B6X5 111 aa17.44■□□□□ 0.38
VPS29-206ENST00000549578 GATA3P23771 443 aa17.44■□□□□ 0.38
VPS29-206ENST00000549578 GLP1RP43220 463 aa17.44■□□□□ 0.38
VPS29-206ENST00000549578 PAX8Q06710 450 aa17.44■□□□□ 0.38
VPS29-206ENST00000549578 LAX1Q8IWV1 398 aa17.44■□□□□ 0.38
VPS29-206ENST00000549578 OR13A1Q8NGR1 328 aa17.44■□□□□ 0.38
VPS29-206ENST00000549578 CMTM3Q96MX0 182 aa17.44■□□□□ 0.38
VPS29-206ENST00000549578 NXF2Q9GZY0 626 aaKnown RBP17.44■□□□□ 0.38
VPS29-206ENST00000549578 MIXL1Q9H2W2 232 aa17.44■□□□□ 0.38
VPS29-206ENST00000549578 DIABLOQ9NR28 239 aa17.44■□□□□ 0.38
VPS29-206ENST00000549578 YAE1D1Q9NRH1 226 aa17.44■□□□□ 0.38
VPS29-206ENST00000549578 KCNS2Q9ULS6 477 aa17.44■□□□□ 0.38
VPS29-206ENST00000549578 TRGV10A0A0A0MS01 117 aa17.43■□□□□ 0.38
VPS29-206ENST00000549578 FAM25AB3EWG3 89 aa17.43■□□□□ 0.38
VPS29-206ENST00000549578 FAM25CB3EWG5 89 aa17.43■□□□□ 0.38
VPS29-206ENST00000549578 FAM25GB3EWG6 89 aa17.43■□□□□ 0.38
VPS29-206ENST00000549578 CA11O75493 328 aa17.43■□□□□ 0.38
VPS29-206ENST00000549578 MADCAM1Q13477 382 aa17.43■□□□□ 0.38
VPS29-206ENST00000549578 CDNFQ49AH0 187 aa17.43■□□□□ 0.38
VPS29-206ENST00000549578 GAPTQ8N292 157 aa17.43■□□□□ 0.38
VPS29-206ENST00000549578 MRPL30Q8TCC3 161 aaKnown RBP17.43■□□□□ 0.38
VPS29-206ENST00000549578 TMPRSS13Q9BYE2 586 aa17.43■□□□□ 0.38
VPS29-206ENST00000549578 C7orf69Q9H7B7 122 aa17.43■□□□□ 0.38
VPS29-206ENST00000549578 OR6C3Q9NZP0 311 aa17.43■□□□□ 0.38
VPS29-206ENST00000549578 SVEP1Q4LDE5 3571 aa17.43■□□□□ 0.38
VPS29-206ENST00000549578 A0A0A6YYH2 397 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 A6NJ64 397 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 ERVFRD-1P60508 538 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 ZNF260Q3ZCT1 412 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 Q71RC1 249 aaPredicted RBP17.42■□□□□ 0.38
VPS29-206ENST00000549578 MRGPRDQ8TDS7 321 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 ZNF714Q96N38 554 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 CMSS1Q9BQ75 279 aaKnown RBP17.42■□□□□ 0.38
VPS29-206ENST00000549578 NCOR1P1Q9H4R4 102 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 CHMP1AQ9HD42 196 aaPredicted RBP17.42■□□□□ 0.38
VPS29-206ENST00000549578 TRAPPC2LQ9UL33 140 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 TMEM235A6NFC5 223 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 SERPINE3A8MV23 424 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 XRCC3O43542 346 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 AVPP01185 164 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 ZNF728P0DKX0 622 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 DLX6P56179 175 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 TMEM69Q5SWH9 247 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 METTL11BQ5VVY1 283 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 Q6ZPA2 131 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 Q8N7P7 452 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 CORO2AQ92828 525 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 DMRTB1Q96MA1 342 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.42■□□□□ 0.38
VPS29-206ENST00000549578 UBE2J1Q9Y385 318 aaPredicted RBP17.42■□□□□ 0.38
VPS29-206ENST00000549578 AUP1Q9Y679 476 aa17.42■□□□□ 0.38
VPS29-206ENST00000549578 A0A1W2PPH5 198 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 A8MV72 311 aaPredicted RBP17.41■□□□□ 0.38
VPS29-206ENST00000549578 NAPSAO96009 420 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 PTHLHP12272 177 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 DLX1P56177 255 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 TAS2R20P59543 309 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 ARFRP1Q13795 201 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 ARL6IP1Q15041 203 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 CR1LQ2VPA4 569 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 KIR3DL3Q8N743 410 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 ZNF565Q8N9K5 539 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 WDFY2Q96P53 400 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 PCGF1Q9BSM1 259 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 SIRPDQ9H106 197 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 C12orf4Q9NQ89 552 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 OPN4Q9UHM6 478 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 KPTNQ9Y664 436 aa17.41■□□□□ 0.38
VPS29-206ENST00000549578 SONP18583 2426 aaKnown RBP17.4■□□□□ 0.38
VPS29-206ENST00000549578 J3QLI3 93 aa17.4■□□□□ 0.38
VPS29-206ENST00000549578 GSTP1P09211 210 aaKnown RBP17.4■□□□□ 0.38
VPS29-206ENST00000549578 CD3GP09693 182 aa17.4■□□□□ 0.38
VPS29-206ENST00000549578 MMP9P14780 707 aa17.4■□□□□ 0.38
VPS29-206ENST00000549578 RCC1P18754 421 aaPredicted RBP17.4■□□□□ 0.38
VPS29-206ENST00000549578 SSTR5P35346 364 aa17.4■□□□□ 0.38
VPS29-206ENST00000549578 PRB3Q04118 309 aaPredicted RBP17.4■□□□□ 0.38
VPS29-206ENST00000549578 C11orf42Q8N5U0 333 aa17.4■□□□□ 0.38
VPS29-206ENST00000549578 SETD6Q8TBK2 473 aa17.4■□□□□ 0.38
VPS29-206ENST00000549578 NUDCD2Q8WVJ2 157 aa17.4■□□□□ 0.38
VPS29-206ENST00000549578 AUNIPQ9H7T9 357 aa17.4■□□□□ 0.38
VPS29-206ENST00000549578 EXTL2Q9UBQ6 330 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms