RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 MT-ND4P03905 459 aa13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 FCGR3AP08637 254 aa13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 CSF1P09603 554 aa13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 NAT1P18440 290 aa13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 ATXN7L3Q14CW9 347 aaPredicted RBP13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 KIAA2026Q5HYC2 2103 aa13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 WDR25Q64LD2 544 aaPredicted RBP13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 ZNF841Q6ZN19 808 aa13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 HOGA1Q86XE5 327 aa13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 MRPL30Q8TCC3 161 aaKnown RBP13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 FAM216AQ8WUB2 273 aa13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 BORCS5Q969J3 196 aa13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 ZMAT3Q9HA38 289 aaKnown RBP13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 ZNF286AQ9HBT8 521 aa13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 IFT46Q9NQC8 304 aa13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 TAS2R3Q9NYW6 316 aa13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 CTSZQ9UBR2 303 aa13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 METRNQ9UJH8 293 aa13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 UBE2J1Q9Y385 318 aaPredicted RBP13.3□□□□□ -0.28
PRPF40A-212ENST00000545856 TRGV10A0A0A0MS01 117 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 PPIAL4CA0A0B4J2A2 164 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 ORC5O43913 435 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 CTXN2P0C2S0 81 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 NDUFB7P17568 137 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 TAS2R46P59540 309 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 GNB2P62879 340 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 HOXA4Q00056 320 aaPredicted RBP13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 LOXL1Q08397 574 aaPredicted RBP13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 PDCD1Q15116 288 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 TRIQKQ629K1 86 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 TRAPPC6BQ86SZ2 158 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 BPIFB2Q8N4F0 458 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 OR10A7Q8NGE5 316 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 CLDND2Q8NHS1 167 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 PLPPR1Q8TBJ4 325 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 NUDCD2Q8WVJ2 157 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 COQ2Q96H96 371 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 C1orf159Q96HA4 380 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 C7orf50Q9BRJ6 194 aaKnown RBP13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 THAP7Q9BT49 309 aaPredicted RBP13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 SSBP3Q9BWW4 388 aaPredicted RBP13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 LINC00574Q9H8X3 128 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 CHMP1AQ9HD42 196 aaPredicted RBP13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 KCNIP1Q9NZI2 227 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 ZNF581Q9P0T4 197 aa13.29□□□□□ -0.28
PRPF40A-212ENST00000545856 MYO9AB2RTY4 2548 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 IGHV4-30-2A0A087WSY4 118 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 MEIKINA0A087WXM9 373 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 HSPB6O14558 160 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 SSX5O60225 188 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 LIPFP07098 398 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 USF1P22415 310 aaPredicted RBP13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 TAS2R19P59542 299 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 LMO4P61968 165 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 RPL31P62899 125 aaKnown RBP13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 AESQ08117 197 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 LYPD2Q6UXB3 125 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 OR52I2Q8NH67 350 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 TRIM63Q969Q1 353 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 DCTN5Q9BTE1 182 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 GAL3ST2Q9H3Q3 398 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 Q9N2K0 584 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 TRAPPC2LQ9UL33 140 aa13.28□□□□□ -0.28
PRPF40A-212ENST00000545856 hCG_1809904A0A1W2PP81 198 aa13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 A0A1W2PPE2 198 aa13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 A0A1W2PR64 198 aa13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 A0A1W2PRV1 198 aa13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 ZNF729A6NN14 1252 aaPredicted RBP13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 FAUP35544 74 aaKnown RBP13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 GDNFP39905 211 aa13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 INPP1P49441 399 aa13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 EDDM3BP56851 147 aa13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 DGCR2P98153 550 aa13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 DYRK1AQ13627 763 aa13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 OLFML2AQ68BL7 652 aa13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 KIR3DL3Q8N743 410 aa13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 TMEM229BQ8NBD8 167 aa13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 BEST4Q8NFU0 473 aa13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 OR4A4PQ8NGN8 299 aa13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 KIF25Q9UIL4 384 aa13.27□□□□□ -0.29
PRPF40A-212ENST00000545856 ABCA2Q9BZC7 2435 aa13.26□□□□□ -0.29
PRPF40A-212ENST00000545856 MEIOCA2RUB1 952 aa13.26□□□□□ -0.29
PRPF40A-212ENST00000545856 IL7P13232 177 aa13.26□□□□□ -0.29
PRPF40A-212ENST00000545856 HLA-DRB3P79483 266 aa13.26□□□□□ -0.29
PRPF40A-212ENST00000545856 EDDM3AQ14507 147 aa13.26□□□□□ -0.29
PRPF40A-212ENST00000545856 MEF2DQ14814 521 aa13.26□□□□□ -0.29
PRPF40A-212ENST00000545856 HMGN3Q15651 99 aa13.26□□□□□ -0.29
PRPF40A-212ENST00000545856 Q3ZCU0 254 aa13.26□□□□□ -0.29
PRPF40A-212ENST00000545856 STEAP3Q658P3 488 aa13.26□□□□□ -0.29
PRPF40A-212ENST00000545856 LY6G5BQ8NDX9 201 aa13.26□□□□□ -0.29
PRPF40A-212ENST00000545856 SDHCQ99643 169 aaPredicted RBP13.26□□□□□ -0.29
PRPF40A-212ENST00000545856 ANXA10Q9UJ72 324 aa13.26□□□□□ -0.29
PRPF40A-212ENST00000545856 RPUSD1Q9UJJ7 312 aaKnown RBP13.26□□□□□ -0.29
PRPF40A-212ENST00000545856 FLNAP21333 2647 aaKnown RBP13.26□□□□□ -0.29
PRPF40A-212ENST00000545856 YLPM1P49750 1951 aaKnown RBP13.25□□□□□ -0.29
PRPF40A-212ENST00000545856 WNK2Q9Y3S1 2297 aa13.25□□□□□ -0.29
PRPF40A-212ENST00000545856 A0A096LNT2 108 aa13.25□□□□□ -0.29
PRPF40A-212ENST00000545856 ANKRD20A5PA0PJZ0 165 aa13.25□□□□□ -0.29
PRPF40A-212ENST00000545856 NAP1L6A6NFF2 107 aa13.25□□□□□ -0.29
PRPF40A-212ENST00000545856 TRDCB7Z8K6 153 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms